miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6790 3' -55.8 NC_001875.2 + 51570 0.66 0.894545
Target:  5'- cGAGCCG-UUCaCGaCGCgCGGCguGGCCa -3'
miRNA:   3'- -UUUGGCaAAG-GC-GCG-GCCGguUUGGc -5'
6790 3' -55.8 NC_001875.2 + 130125 0.66 0.894545
Target:  5'- cGACCGgugUCGCGCCcgcagcauuuguGGCCAcagaagagGGCCGc -3'
miRNA:   3'- uUUGGCaaaGGCGCGG------------CCGGU--------UUGGC- -5'
6790 3' -55.8 NC_001875.2 + 65739 0.66 0.894545
Target:  5'- -cGCCGcccgCCGCGCgGGCCucGgCGu -3'
miRNA:   3'- uuUGGCaaa-GGCGCGgCCGGuuUgGC- -5'
6790 3' -55.8 NC_001875.2 + 95428 0.66 0.887737
Target:  5'- -cACCG---CgGCGCCGGCCAGcgugcgcgGCUGg -3'
miRNA:   3'- uuUGGCaaaGgCGCGGCCGGUU--------UGGC- -5'
6790 3' -55.8 NC_001875.2 + 114972 0.66 0.887737
Target:  5'- aGAAgCGg--UCGCGCUGGCgGcGCCGa -3'
miRNA:   3'- -UUUgGCaaaGGCGCGGCCGgUuUGGC- -5'
6790 3' -55.8 NC_001875.2 + 116732 0.66 0.887737
Target:  5'- aAGACUGUagUUGCGCUGGCCc-ACCu -3'
miRNA:   3'- -UUUGGCAaaGGCGCGGCCGGuuUGGc -5'
6790 3' -55.8 NC_001875.2 + 52467 0.66 0.887737
Target:  5'- gGAGCUGUUugggCUGU-CCGGCCAGuuuACCGa -3'
miRNA:   3'- -UUUGGCAAa---GGCGcGGCCGGUU---UGGC- -5'
6790 3' -55.8 NC_001875.2 + 18472 0.66 0.887737
Target:  5'- -cACCuUUUuuGCGCCGcGCCGcagcgacgcAGCCGc -3'
miRNA:   3'- uuUGGcAAAggCGCGGC-CGGU---------UUGGC- -5'
6790 3' -55.8 NC_001875.2 + 108669 0.66 0.887737
Target:  5'- cGGCCGUgcCCGCagccGCCGuGCCcgcAGCCGc -3'
miRNA:   3'- uUUGGCAaaGGCG----CGGC-CGGu--UUGGC- -5'
6790 3' -55.8 NC_001875.2 + 87651 0.66 0.887043
Target:  5'- -cGCUGUUUCaCGCGCCGacggucagcgcguGCgAAAUCGa -3'
miRNA:   3'- uuUGGCAAAG-GCGCGGC-------------CGgUUUGGC- -5'
6790 3' -55.8 NC_001875.2 + 90889 0.66 0.880696
Target:  5'- uGGCCGgggCCGCGUCGGgCAuguuGACgGg -3'
miRNA:   3'- uUUGGCaaaGGCGCGGCCgGU----UUGgC- -5'
6790 3' -55.8 NC_001875.2 + 37585 0.66 0.880696
Target:  5'- -cGCCGgcgcgagcgCCGCgGCCGGCCGcACgGc -3'
miRNA:   3'- uuUGGCaaa------GGCG-CGGCCGGUuUGgC- -5'
6790 3' -55.8 NC_001875.2 + 7123 0.66 0.880696
Target:  5'- uGACCGcca-CGCGCCGcuuGCCAGGCgCGu -3'
miRNA:   3'- uUUGGCaaagGCGCGGC---CGGUUUG-GC- -5'
6790 3' -55.8 NC_001875.2 + 70678 0.66 0.873428
Target:  5'- gAAAUUGUgaaCGUGuuGGCCAAACUa -3'
miRNA:   3'- -UUUGGCAaagGCGCggCCGGUUUGGc -5'
6790 3' -55.8 NC_001875.2 + 102021 0.66 0.865937
Target:  5'- cGGCCGUgcCCGagaaauauuuguCGCCGGCguAGCCu -3'
miRNA:   3'- uUUGGCAaaGGC------------GCGGCCGguUUGGc -5'
6790 3' -55.8 NC_001875.2 + 16404 0.66 0.865937
Target:  5'- aGGugCGgugUUCGuCGCC-GCCAAACCGu -3'
miRNA:   3'- -UUugGCaa-AGGC-GCGGcCGGUUUGGC- -5'
6790 3' -55.8 NC_001875.2 + 46548 0.66 0.865937
Target:  5'- --cCCGcgcCCGCGCCGcccGCgCAAACCGu -3'
miRNA:   3'- uuuGGCaaaGGCGCGGC---CG-GUUUGGC- -5'
6790 3' -55.8 NC_001875.2 + 23082 0.66 0.863648
Target:  5'- -cACCGgcaacCCGCGCCGcgugcagcugccccGCCAAagGCCGc -3'
miRNA:   3'- uuUGGCaaa--GGCGCGGC--------------CGGUU--UGGC- -5'
6790 3' -55.8 NC_001875.2 + 19979 0.67 0.858231
Target:  5'- -cGCCGUUgcugaCGUGCgUGGCCAGACa- -3'
miRNA:   3'- uuUGGCAAag---GCGCG-GCCGGUUUGgc -5'
6790 3' -55.8 NC_001875.2 + 21186 0.67 0.858231
Target:  5'- aAAAUCGUcgUCGCGCggcaCGGCCAGcGCCa -3'
miRNA:   3'- -UUUGGCAaaGGCGCG----GCCGGUU-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.