miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6790 5' -47.5 NC_001875.2 + 95019 0.66 0.999695
Target:  5'- gCGCGggcgcGCAAcugcCGCGGCGcgUaacgCGCa -3'
miRNA:   3'- -GCGCaaaa-CGUU----GCGCCGUuaAa---GCG- -5'
6790 5' -47.5 NC_001875.2 + 124709 0.66 0.999695
Target:  5'- uGCGgugaaGCAacaggcacGCGuCGGCcGUUUCGCc -3'
miRNA:   3'- gCGCaaaa-CGU--------UGC-GCCGuUAAAGCG- -5'
6790 5' -47.5 NC_001875.2 + 70651 0.66 0.999695
Target:  5'- cCGCGUUUgcgUGCAAUGCGGaacc--CGa -3'
miRNA:   3'- -GCGCAAA---ACGUUGCGCCguuaaaGCg -5'
6790 5' -47.5 NC_001875.2 + 16536 0.66 0.999695
Target:  5'- uCGCGcg-UGCAauacaaugacguGCGCGGCg----CGCu -3'
miRNA:   3'- -GCGCaaaACGU------------UGCGCCGuuaaaGCG- -5'
6790 5' -47.5 NC_001875.2 + 128705 0.66 0.999695
Target:  5'- cCGCGUccgcGCAGCG-GGC---UUCGCc -3'
miRNA:   3'- -GCGCAaaa-CGUUGCgCCGuuaAAGCG- -5'
6790 5' -47.5 NC_001875.2 + 85374 0.66 0.999695
Target:  5'- uCGCGUUg-GCaAACGCcguuuGCGAUUUgCGCg -3'
miRNA:   3'- -GCGCAAaaCG-UUGCGc----CGUUAAA-GCG- -5'
6790 5' -47.5 NC_001875.2 + 52759 0.66 0.999695
Target:  5'- aUGCGcacuacGcCAACGCGGCcaacAUUUUGCa -3'
miRNA:   3'- -GCGCaaaa--C-GUUGCGCCGu---UAAAGCG- -5'
6790 5' -47.5 NC_001875.2 + 11870 0.66 0.999695
Target:  5'- uGUuUUUUGCGguguGCGCGGCGAcggaggggUCGUc -3'
miRNA:   3'- gCGcAAAACGU----UGCGCCGUUaa------AGCG- -5'
6790 5' -47.5 NC_001875.2 + 99591 0.66 0.999695
Target:  5'- uGCGggUUGUcGCGCcGGUAugucugCGCg -3'
miRNA:   3'- gCGCaaAACGuUGCG-CCGUuaaa--GCG- -5'
6790 5' -47.5 NC_001875.2 + 31986 0.66 0.999695
Target:  5'- gCGCGUacggccggUUUGUgAGCgGCGGCGAcgcagCGCa -3'
miRNA:   3'- -GCGCA--------AAACG-UUG-CGCCGUUaaa--GCG- -5'
6790 5' -47.5 NC_001875.2 + 113125 0.66 0.999695
Target:  5'- gCGCGcugUUGUugUGCGGCAcgUUaaugUGCa -3'
miRNA:   3'- -GCGCaa-AACGuuGCGCCGUuaAA----GCG- -5'
6790 5' -47.5 NC_001875.2 + 35857 0.66 0.999695
Target:  5'- aCGCgGUUUUGUuGCGCaGCGcgUUUGa -3'
miRNA:   3'- -GCG-CAAAACGuUGCGcCGUuaAAGCg -5'
6790 5' -47.5 NC_001875.2 + 72938 0.66 0.999695
Target:  5'- cCGCGgcUUcGUAGCGC-GCG--UUCGCg -3'
miRNA:   3'- -GCGCaaAA-CGUUGCGcCGUuaAAGCG- -5'
6790 5' -47.5 NC_001875.2 + 62380 0.66 0.999695
Target:  5'- aCGCGcacgUUGUuuAGCGUGGCcggcgCGCa -3'
miRNA:   3'- -GCGCaa--AACG--UUGCGCCGuuaaaGCG- -5'
6790 5' -47.5 NC_001875.2 + 128907 0.66 0.999695
Target:  5'- gCGCGcca-GC-GCGCGGUGAaUUUGCa -3'
miRNA:   3'- -GCGCaaaaCGuUGCGCCGUUaAAGCG- -5'
6790 5' -47.5 NC_001875.2 + 130442 0.66 0.999695
Target:  5'- uGUGUUugUUGCGAagcagaaGCGGUGGgcgUUUGCg -3'
miRNA:   3'- gCGCAA--AACGUUg------CGCCGUUa--AAGCG- -5'
6790 5' -47.5 NC_001875.2 + 84156 0.66 0.999695
Target:  5'- cCGCGUUgaGaaacGCGCGGCGcgc-CGCg -3'
miRNA:   3'- -GCGCAAaaCgu--UGCGCCGUuaaaGCG- -5'
6790 5' -47.5 NC_001875.2 + 101390 0.66 0.999695
Target:  5'- aCGCGc---GCAACGCGcGCcagcugCGCg -3'
miRNA:   3'- -GCGCaaaaCGUUGCGC-CGuuaaa-GCG- -5'
6790 5' -47.5 NC_001875.2 + 1312 0.66 0.99968
Target:  5'- aUGCGgagguuaacgUGCugaGCGGCGAUUUCu- -3'
miRNA:   3'- -GCGCaaa-------ACGuugCGCCGUUAAAGcg -5'
6790 5' -47.5 NC_001875.2 + 92258 0.66 0.999648
Target:  5'- aCGCGgaccgugcugaGCAGCGCGGCcggGAUguagUUGUa -3'
miRNA:   3'- -GCGCaaaa-------CGUUGCGCCG---UUAa---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.