miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6791 3' -57.2 NC_001875.2 + 9771 0.66 0.842584
Target:  5'- aGGCCAagcGCaCGCGGCACauccgGGCACUGcgcGUGc -3'
miRNA:   3'- -CUGGU---CG-GCGCUGUG-----CCGUGAC---UACu -5'
6791 3' -57.2 NC_001875.2 + 108752 0.66 0.842584
Target:  5'- gGGgCAGCUGC-ACGCGGCGCgGGUu- -3'
miRNA:   3'- -CUgGUCGGCGcUGUGCCGUGaCUAcu -5'
6791 3' -57.2 NC_001875.2 + 58473 0.66 0.841769
Target:  5'- aACCAGUacaaGCGcaccauaGCGCGGCAuUUGGUGGg -3'
miRNA:   3'- cUGGUCGg---CGC-------UGUGCCGU-GACUACU- -5'
6791 3' -57.2 NC_001875.2 + 54590 0.66 0.834348
Target:  5'- -cCCGGCgGCGcgccCACGGCGCgguaucGGUGGa -3'
miRNA:   3'- cuGGUCGgCGCu---GUGCCGUGa-----CUACU- -5'
6791 3' -57.2 NC_001875.2 + 68599 0.66 0.834348
Target:  5'- cGCCgAGCC-CGACGCGuUugUGGUGAc -3'
miRNA:   3'- cUGG-UCGGcGCUGUGCcGugACUACU- -5'
6791 3' -57.2 NC_001875.2 + 67832 0.66 0.825926
Target:  5'- -uUCGGCCaaGUGGCGCGGCguGCUGAa-- -3'
miRNA:   3'- cuGGUCGG--CGCUGUGCCG--UGACUacu -5'
6791 3' -57.2 NC_001875.2 + 17629 0.66 0.825926
Target:  5'- uGCUGGCCG-GACACGG-ACUGGgcUGGg -3'
miRNA:   3'- cUGGUCGGCgCUGUGCCgUGACU--ACU- -5'
6791 3' -57.2 NC_001875.2 + 95505 0.66 0.817326
Target:  5'- cGCCGGCCGCGuACACGcGCAa------ -3'
miRNA:   3'- cUGGUCGGCGC-UGUGC-CGUgacuacu -5'
6791 3' -57.2 NC_001875.2 + 39667 0.66 0.817326
Target:  5'- gGGCCGGCgGCG-CGCGGCggcgaGCUGcuaGAg -3'
miRNA:   3'- -CUGGUCGgCGCuGUGCCG-----UGACua-CU- -5'
6791 3' -57.2 NC_001875.2 + 113359 0.66 0.817326
Target:  5'- cGGCUgcgucGCUGCGGCGCGGCGCaaaaaaGGUGu -3'
miRNA:   3'- -CUGGu----CGGCGCUGUGCCGUGa-----CUACu -5'
6791 3' -57.2 NC_001875.2 + 66660 0.66 0.808556
Target:  5'- uGGCCAGCUGCuGGucgaACGGCAgCggGAUGGg -3'
miRNA:   3'- -CUGGUCGGCG-CUg---UGCCGU-Ga-CUACU- -5'
6791 3' -57.2 NC_001875.2 + 85827 0.66 0.80767
Target:  5'- cGCCAGCUGCGugGgCGGCcgauccuGCUGuUGu -3'
miRNA:   3'- cUGGUCGGCGCugU-GCCG-------UGACuACu -5'
6791 3' -57.2 NC_001875.2 + 99262 0.66 0.799625
Target:  5'- cGGCUAGUCGaggugcGCGCGGCACUGcUGc -3'
miRNA:   3'- -CUGGUCGGCgc----UGUGCCGUGACuACu -5'
6791 3' -57.2 NC_001875.2 + 63265 0.66 0.799625
Target:  5'- cGGCCAGCgGCGccACGCGGUGCg----- -3'
miRNA:   3'- -CUGGUCGgCGC--UGUGCCGUGacuacu -5'
6791 3' -57.2 NC_001875.2 + 30677 0.67 0.79054
Target:  5'- uGACCAGCgccaCGCG-CACGGcCACgUGGUcGAa -3'
miRNA:   3'- -CUGGUCG----GCGCuGUGCC-GUG-ACUA-CU- -5'
6791 3' -57.2 NC_001875.2 + 66115 0.67 0.781311
Target:  5'- cGGCgGGCgGCGAgGCGGCGCcgcccGcgGAa -3'
miRNA:   3'- -CUGgUCGgCGCUgUGCCGUGa----CuaCU- -5'
6791 3' -57.2 NC_001875.2 + 81908 0.67 0.781311
Target:  5'- cGACCAGCUgauuaGCGcGCGCGGCuccgacgaccaGCUGAUu- -3'
miRNA:   3'- -CUGGUCGG-----CGC-UGUGCCG-----------UGACUAcu -5'
6791 3' -57.2 NC_001875.2 + 111766 0.67 0.781311
Target:  5'- cGugC-GCCGaCGACugGuGuCGCUGGUGAc -3'
miRNA:   3'- -CugGuCGGC-GCUGugC-C-GUGACUACU- -5'
6791 3' -57.2 NC_001875.2 + 63455 0.67 0.762456
Target:  5'- cGGCCAGCCGCGA---GGCGUUGGUu- -3'
miRNA:   3'- -CUGGUCGGCGCUgugCCGUGACUAcu -5'
6791 3' -57.2 NC_001875.2 + 111982 0.67 0.762456
Target:  5'- -cCCGcGCCGCGACGCGGCcgagucuugcgcGCUGu--- -3'
miRNA:   3'- cuGGU-CGGCGCUGUGCCG------------UGACuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.