miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6792 3' -50.8 NC_001875.2 + 82002 0.65 0.988794
Target:  5'- cCGGCGCGCAaaaagaagcgaaucGGCAAGGugguggccaGCCAGAAg-- -3'
miRNA:   3'- -GUCGUGUGU--------------UCGUUCC---------CGGUUUUgcu -5'
6792 3' -50.8 NC_001875.2 + 130243 0.66 0.987716
Target:  5'- gGGCACAUAAacaaacucGUcaGAGGGCCGAGAa-- -3'
miRNA:   3'- gUCGUGUGUU--------CG--UUCCCGGUUUUgcu -5'
6792 3' -50.8 NC_001875.2 + 99910 0.66 0.987716
Target:  5'- gAGCGCaACGAGC--GGGCCGcgcgcGCGGu -3'
miRNA:   3'- gUCGUG-UGUUCGuuCCCGGUuu---UGCU- -5'
6792 3' -50.8 NC_001875.2 + 47206 0.66 0.987716
Target:  5'- gAGCACACGcGCGGGuucauuGGCgAcGACGAa -3'
miRNA:   3'- gUCGUGUGUuCGUUC------CCGgUuUUGCU- -5'
6792 3' -50.8 NC_001875.2 + 69164 0.66 0.987716
Target:  5'- -cGCACACAAcCAAGuGCCGGcACGGc -3'
miRNA:   3'- guCGUGUGUUcGUUCcCGGUUuUGCU- -5'
6792 3' -50.8 NC_001875.2 + 122145 0.66 0.987716
Target:  5'- cCGGCGCGCAcgacGGCGAGccCCAacgGAGCGGu -3'
miRNA:   3'- -GUCGUGUGU----UCGUUCccGGU---UUUGCU- -5'
6792 3' -50.8 NC_001875.2 + 45522 0.66 0.986039
Target:  5'- gCAGCACGCAGuuGCGccgauuauuaAGGGCgCAGcACGu -3'
miRNA:   3'- -GUCGUGUGUU--CGU----------UCCCG-GUUuUGCu -5'
6792 3' -50.8 NC_001875.2 + 48427 0.66 0.986039
Target:  5'- gCAGCGCGC-AGUuuugcGGcGCCAugGCGAc -3'
miRNA:   3'- -GUCGUGUGuUCGuu---CC-CGGUuuUGCU- -5'
6792 3' -50.8 NC_001875.2 + 65384 0.66 0.986039
Target:  5'- -cGCGCGCGuGguGGGGCUGAAAgaGAa -3'
miRNA:   3'- guCGUGUGUuCguUCCCGGUUUUg-CU- -5'
6792 3' -50.8 NC_001875.2 + 77261 0.66 0.986039
Target:  5'- gGGCGCGCcgccGGGCgAAGcGGCCGccGCGGc -3'
miRNA:   3'- gUCGUGUG----UUCG-UUC-CCGGUuuUGCU- -5'
6792 3' -50.8 NC_001875.2 + 97909 0.66 0.986039
Target:  5'- -cGCgGCGCAAGCu-GGGCCAccucAACGu -3'
miRNA:   3'- guCG-UGUGUUCGuuCCCGGUu---UUGCu -5'
6792 3' -50.8 NC_001875.2 + 68915 0.66 0.986039
Target:  5'- gAGUcaACGAGCugugcGAGGGCCGgccGGACGGg -3'
miRNA:   3'- gUCGugUGUUCG-----UUCCCGGU---UUUGCU- -5'
6792 3' -50.8 NC_001875.2 + 84894 0.66 0.984952
Target:  5'- gCAGCAgCACAaccuuggcguagcgcAGCAcGGGGCU--GGCGAa -3'
miRNA:   3'- -GUCGU-GUGU---------------UCGU-UCCCGGuuUUGCU- -5'
6792 3' -50.8 NC_001875.2 + 112554 0.66 0.984193
Target:  5'- -uGUGCGCAAuaaaggccGCAAGGGCCAccGCu- -3'
miRNA:   3'- guCGUGUGUU--------CGUUCCCGGUuuUGcu -5'
6792 3' -50.8 NC_001875.2 + 72557 0.66 0.984193
Target:  5'- gGGCGCuGCGGGCGcGGGCgCGGGcgcuGCGGg -3'
miRNA:   3'- gUCGUG-UGUUCGUuCCCG-GUUU----UGCU- -5'
6792 3' -50.8 NC_001875.2 + 87502 0.66 0.984193
Target:  5'- gCAGCGCaACAAGCGAGua--AAAGCGAa -3'
miRNA:   3'- -GUCGUG-UGUUCGUUCccggUUUUGCU- -5'
6792 3' -50.8 NC_001875.2 + 127437 0.66 0.984193
Target:  5'- -cGUGCAUGAGCAAGacgauGGCCGAuuUGAg -3'
miRNA:   3'- guCGUGUGUUCGUUC-----CCGGUUuuGCU- -5'
6792 3' -50.8 NC_001875.2 + 94675 0.66 0.984193
Target:  5'- cCAGCGCGC-GGCAcGGGuGCUGGAACc- -3'
miRNA:   3'- -GUCGUGUGuUCGU-UCC-CGGUUUUGcu -5'
6792 3' -50.8 NC_001875.2 + 39592 0.66 0.984193
Target:  5'- uCAGCACgguccGCGuGCAcGGGCUAAAguaGCGGc -3'
miRNA:   3'- -GUCGUG-----UGUuCGUuCCCGGUUU---UGCU- -5'
6792 3' -50.8 NC_001875.2 + 38282 0.66 0.983404
Target:  5'- gCAGCGCGCGuacgacgacgcgguGGCGAGcGCCGAcaaggccGGCGGc -3'
miRNA:   3'- -GUCGUGUGU--------------UCGUUCcCGGUU-------UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.