miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6792 5' -57.9 NC_001875.2 + 47091 0.66 0.842169
Target:  5'- cGCCGaaUgCAuUGAGCgCUGGAAGCGCg- -3'
miRNA:   3'- cCGGC--AgGU-GCUCG-GACCUUUGCGgg -5'
6792 5' -57.9 NC_001875.2 + 2261 0.66 0.842169
Target:  5'- uGGCUGUCgCuGCGGGCCaUGuuGACGUCg -3'
miRNA:   3'- -CCGGCAG-G-UGCUCGG-ACcuUUGCGGg -5'
6792 5' -57.9 NC_001875.2 + 29717 0.66 0.842169
Target:  5'- cGCCGUgaaguugcUCACGGGCCaaGGcguAGCgGCCCa -3'
miRNA:   3'- cCGGCA--------GGUGCUCGGa-CCu--UUG-CGGG- -5'
6792 5' -57.9 NC_001875.2 + 52700 0.66 0.842169
Target:  5'- cGCCGUggcaaACGAGCCcgccGcgGCGCCCg -3'
miRNA:   3'- cCGGCAgg---UGCUCGGac--CuuUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 33481 0.66 0.842169
Target:  5'- uGGCgCG-CCGCGcGCUgGGguGCGCCa -3'
miRNA:   3'- -CCG-GCaGGUGCuCGGaCCuuUGCGGg -5'
6792 5' -57.9 NC_001875.2 + 33448 0.66 0.834907
Target:  5'- --aCGUCCGCGuccGCCaccucgucguggucgGGgcGCGCCCa -3'
miRNA:   3'- ccgGCAGGUGCu--CGGa--------------CCuuUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 32774 0.66 0.834091
Target:  5'- aGCgCGUCCucGCGcGGCgUGGGcgGGCGCCg -3'
miRNA:   3'- cCG-GCAGG--UGC-UCGgACCU--UUGCGGg -5'
6792 5' -57.9 NC_001875.2 + 39324 0.66 0.825834
Target:  5'- cGGCggCGUgCGCGcgcugcaggcgcAGCCUGacgcuGACGCCCg -3'
miRNA:   3'- -CCG--GCAgGUGC------------UCGGACcu---UUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 12306 0.66 0.817407
Target:  5'- cGCCG-CCGUGuGCgUGGucaacGCGCCCg -3'
miRNA:   3'- cCGGCaGGUGCuCGgACCuu---UGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 105532 0.66 0.817407
Target:  5'- cGGCuCGU-CGCGAaaUUGGcguGACGCCCa -3'
miRNA:   3'- -CCG-GCAgGUGCUcgGACCu--UUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 94789 0.66 0.817407
Target:  5'- uGGCCGcgUCCGCGcGCgUGc-AGCGCCg -3'
miRNA:   3'- -CCGGC--AGGUGCuCGgACcuUUGCGGg -5'
6792 5' -57.9 NC_001875.2 + 55368 0.66 0.817407
Target:  5'- cGUCGUCCGCG-GCCguuuUGccGGCGCCg -3'
miRNA:   3'- cCGGCAGGUGCuCGG----ACcuUUGCGGg -5'
6792 5' -57.9 NC_001875.2 + 70048 0.66 0.816555
Target:  5'- cGGUCG-CUgcgacggACGGGCCUcuGAAGCGCCg -3'
miRNA:   3'- -CCGGCaGG-------UGCUCGGAc-CUUUGCGGg -5'
6792 5' -57.9 NC_001875.2 + 74164 0.66 0.808816
Target:  5'- cGCCG-CCGCcAGCUUGGAcGCGUUUu -3'
miRNA:   3'- cCGGCaGGUGcUCGGACCUuUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 62113 0.66 0.808816
Target:  5'- gGGCgCGUggCCACGAuGUccuucaugucgCUGGAccACGCCCa -3'
miRNA:   3'- -CCG-GCA--GGUGCU-CG-----------GACCUu-UGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 72196 0.66 0.808816
Target:  5'- gGGCUcaaacaGcCCACGAGCCaGcGAcgcGGCGUCCg -3'
miRNA:   3'- -CCGG------CaGGUGCUCGGaC-CU---UUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 19227 0.67 0.80007
Target:  5'- cGCCGUgCGCGAGUUugUGGAAGagacggGCCg -3'
miRNA:   3'- cCGGCAgGUGCUCGG--ACCUUUg-----CGGg -5'
6792 5' -57.9 NC_001875.2 + 93564 0.67 0.80007
Target:  5'- cGUCGUCgUACGcGCgCUGcGAGGCGCUCu -3'
miRNA:   3'- cCGGCAG-GUGCuCG-GAC-CUUUGCGGG- -5'
6792 5' -57.9 NC_001875.2 + 7234 0.67 0.799187
Target:  5'- uGGCCGguucaugcacuuUCCGCGcugcagcGGCCUGGcgcggguCGCCg -3'
miRNA:   3'- -CCGGC------------AGGUGC-------UCGGACCuuu----GCGGg -5'
6792 5' -57.9 NC_001875.2 + 117343 0.67 0.796529
Target:  5'- cGGCgCGggcgaaCCgGCGGGCCggcuggccgucggGGAGGCGCCg -3'
miRNA:   3'- -CCG-GCa-----GG-UGCUCGGa------------CCUUUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.