miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6793 3' -55.9 NC_001875.2 + 113354 0.66 0.881874
Target:  5'- uUGCCUCCAggUCGUCGucGCUCAuuGCc -3'
miRNA:   3'- -AUGGAGGUggAGCAGCcuUGAGU--CGu -5'
6793 3' -55.9 NC_001875.2 + 93533 0.66 0.859434
Target:  5'- aUGCCgCCgGCCUUGUCGGcGCUCGcCAc -3'
miRNA:   3'- -AUGGaGG-UGGAGCAGCCuUGAGUcGU- -5'
6793 3' -55.9 NC_001875.2 + 75956 0.67 0.826575
Target:  5'- gACCgcggCCAUCggcacaGUCgaGGGGCUCAGCAa -3'
miRNA:   3'- aUGGa---GGUGGag----CAG--CCUUGAGUCGU- -5'
6793 3' -55.9 NC_001875.2 + 63235 0.67 0.799984
Target:  5'- cGCCcgUCACCacaaacgCGUCGG-GCUCGGCGg -3'
miRNA:   3'- aUGGa-GGUGGa------GCAGCCuUGAGUCGU- -5'
6793 3' -55.9 NC_001875.2 + 108645 0.68 0.771979
Target:  5'- gUGCCUgaUUACCUUGUUGG-GCUUAGCGc -3'
miRNA:   3'- -AUGGA--GGUGGAGCAGCCuUGAGUCGU- -5'
6793 3' -55.9 NC_001875.2 + 39215 0.68 0.762372
Target:  5'- aACCgCCACgUCGUCGGGuuuuC-CGGCAu -3'
miRNA:   3'- aUGGaGGUGgAGCAGCCUu---GaGUCGU- -5'
6793 3' -55.9 NC_001875.2 + 110182 0.71 0.630119
Target:  5'- gGCCUCCGCCUUGUCGuuGCaagacgaCAGCc -3'
miRNA:   3'- aUGGAGGUGGAGCAGCcuUGa------GUCGu -5'
6793 3' -55.9 NC_001875.2 + 70265 1.06 0.003451
Target:  5'- cUACCUCCACCUCGUCGGAACUCAGCAc -3'
miRNA:   3'- -AUGGAGGUGGAGCAGCCUUGAGUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.