Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6793 | 3' | -55.9 | NC_001875.2 | + | 113354 | 0.66 | 0.881874 |
Target: 5'- uUGCCUCCAggUCGUCGucGCUCAuuGCc -3' miRNA: 3'- -AUGGAGGUggAGCAGCcuUGAGU--CGu -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 93533 | 0.66 | 0.859434 |
Target: 5'- aUGCCgCCgGCCUUGUCGGcGCUCGcCAc -3' miRNA: 3'- -AUGGaGG-UGGAGCAGCCuUGAGUcGU- -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 75956 | 0.67 | 0.826575 |
Target: 5'- gACCgcggCCAUCggcacaGUCgaGGGGCUCAGCAa -3' miRNA: 3'- aUGGa---GGUGGag----CAG--CCUUGAGUCGU- -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 63235 | 0.67 | 0.799984 |
Target: 5'- cGCCcgUCACCacaaacgCGUCGG-GCUCGGCGg -3' miRNA: 3'- aUGGa-GGUGGa------GCAGCCuUGAGUCGU- -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 108645 | 0.68 | 0.771979 |
Target: 5'- gUGCCUgaUUACCUUGUUGG-GCUUAGCGc -3' miRNA: 3'- -AUGGA--GGUGGAGCAGCCuUGAGUCGU- -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 39215 | 0.68 | 0.762372 |
Target: 5'- aACCgCCACgUCGUCGGGuuuuC-CGGCAu -3' miRNA: 3'- aUGGaGGUGgAGCAGCCUu---GaGUCGU- -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 110182 | 0.71 | 0.630119 |
Target: 5'- gGCCUCCGCCUUGUCGuuGCaagacgaCAGCc -3' miRNA: 3'- aUGGAGGUGGAGCAGCcuUGa------GUCGu -5' |
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6793 | 3' | -55.9 | NC_001875.2 | + | 70265 | 1.06 | 0.003451 |
Target: 5'- cUACCUCCACCUCGUCGGAACUCAGCAc -3' miRNA: 3'- -AUGGAGGUGGAGCAGCCUUGAGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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