miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6793 5' -57 NC_001875.2 + 11302 0.66 0.865008
Target:  5'- uGCACaaa--CCC-CAUGGUGGCCuGCa -3'
miRNA:   3'- gCGUGgcacaGGGuGUACUACCGG-CG- -5'
6793 5' -57 NC_001875.2 + 123537 0.66 0.865008
Target:  5'- uGCACCcaa-CCCGC-UGcUGGCCGUg -3'
miRNA:   3'- gCGUGGcacaGGGUGuACuACCGGCG- -5'
6793 5' -57 NC_001875.2 + 96180 0.66 0.857402
Target:  5'- gCGCACaa-GUgCC---UGAUGGCCGCg -3'
miRNA:   3'- -GCGUGgcaCAgGGuguACUACCGGCG- -5'
6793 5' -57 NC_001875.2 + 74021 0.66 0.857402
Target:  5'- aGCACCGcGgCgCACAaGAUuGCCGCg -3'
miRNA:   3'- gCGUGGCaCaGgGUGUaCUAcCGGCG- -5'
6793 5' -57 NC_001875.2 + 68999 0.66 0.857402
Target:  5'- aGUGCCGcgGgggCaagCACGUGGUGGCgCGCu -3'
miRNA:   3'- gCGUGGCa-Ca--Gg--GUGUACUACCG-GCG- -5'
6793 5' -57 NC_001875.2 + 104483 0.66 0.857402
Target:  5'- aCGUGCUgGUGagCCGCAUGAUGcgaGCCGg -3'
miRNA:   3'- -GCGUGG-CACagGGUGUACUAC---CGGCg -5'
6793 5' -57 NC_001875.2 + 48016 0.66 0.849593
Target:  5'- --gAUCGUGguggcggCCCACGUGGccGCCGCc -3'
miRNA:   3'- gcgUGGCACa------GGGUGUACUacCGGCG- -5'
6793 5' -57 NC_001875.2 + 125588 0.66 0.849593
Target:  5'- gGUACUuaguGUGUCgCUACAUGGUGGa-GCg -3'
miRNA:   3'- gCGUGG----CACAG-GGUGUACUACCggCG- -5'
6793 5' -57 NC_001875.2 + 11006 0.66 0.848801
Target:  5'- gGCGCgCGUG-CCCAuggugugccugccCAUGAUGGgCGa -3'
miRNA:   3'- gCGUG-GCACaGGGU-------------GUACUACCgGCg -5'
6793 5' -57 NC_001875.2 + 122058 0.66 0.841587
Target:  5'- aCGCGCaGUG-CCCg---GAUGuGCCGCg -3'
miRNA:   3'- -GCGUGgCACaGGGuguaCUAC-CGGCG- -5'
6793 5' -57 NC_001875.2 + 35777 0.66 0.841587
Target:  5'- uGCACCuuuUGaCCC--GUGAUGGCgCGCa -3'
miRNA:   3'- gCGUGGc--ACaGGGugUACUACCG-GCG- -5'
6793 5' -57 NC_001875.2 + 123379 0.66 0.841587
Target:  5'- cCGCGCgaCGUGaccaagcaCCCGCAUu-UGGCCGUg -3'
miRNA:   3'- -GCGUG--GCACa-------GGGUGUAcuACCGGCG- -5'
6793 5' -57 NC_001875.2 + 2299 0.66 0.833393
Target:  5'- gCGCGCCGUGgccgCgCGCAgcucGGCCaGCu -3'
miRNA:   3'- -GCGUGGCACa---GgGUGUacuaCCGG-CG- -5'
6793 5' -57 NC_001875.2 + 91701 0.66 0.833393
Target:  5'- cCGUGCgGUGccagCCCAUggagGUGAcGGCCGUc -3'
miRNA:   3'- -GCGUGgCACa---GGGUG----UACUaCCGGCG- -5'
6793 5' -57 NC_001875.2 + 94759 0.67 0.825016
Target:  5'- aCGCgGCgGUGUCguccgccaaaCACAgcGUGGCCGCg -3'
miRNA:   3'- -GCG-UGgCACAGg---------GUGUacUACCGGCG- -5'
6793 5' -57 NC_001875.2 + 66348 0.67 0.825016
Target:  5'- -aCGCCGcGUUCUcaaACAUGucgGGCCGCu -3'
miRNA:   3'- gcGUGGCaCAGGG---UGUACua-CCGGCG- -5'
6793 5' -57 NC_001875.2 + 91401 0.67 0.825016
Target:  5'- uGCGCCaGcGgcagCUCGCAauUGAUGGgCCGCa -3'
miRNA:   3'- gCGUGG-CaCa---GGGUGU--ACUACC-GGCG- -5'
6793 5' -57 NC_001875.2 + 102074 0.67 0.823319
Target:  5'- cCGCgGCCGUacauggcgacgCCCACgAUGAguuugugGGCCGCu -3'
miRNA:   3'- -GCG-UGGCAca---------GGGUG-UACUa------CCGGCG- -5'
6793 5' -57 NC_001875.2 + 25970 0.67 0.817327
Target:  5'- uGCACCGacucgGUCacguuugugagcagaCuCGUGGUGGCCGUc -3'
miRNA:   3'- gCGUGGCa----CAGg--------------GuGUACUACCGGCG- -5'
6793 5' -57 NC_001875.2 + 130134 0.67 0.816465
Target:  5'- uCGCGCCcgcagcauuuGUGg-CCACAgaaGAgGGCCGCg -3'
miRNA:   3'- -GCGUGG----------CACagGGUGUa--CUaCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.