miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6793 5' -57 NC_001875.2 + 23092 0.67 0.816465
Target:  5'- cCGCGCCGcgugcagcUGcCCCGCcaaa-GGCCGCu -3'
miRNA:   3'- -GCGUGGC--------ACaGGGUGuacuaCCGGCG- -5'
6793 5' -57 NC_001875.2 + 68563 0.67 0.816465
Target:  5'- gGCGgCGgcgGUCgcgcaCCGCGUGGcgccgcUGGCCGCc -3'
miRNA:   3'- gCGUgGCa--CAG-----GGUGUACU------ACCGGCG- -5'
6793 5' -57 NC_001875.2 + 110123 0.67 0.816465
Target:  5'- aCGCGCUGUGgaaCCUGCugcgGcUGGaCCGCa -3'
miRNA:   3'- -GCGUGGCACa--GGGUGua--CuACC-GGCG- -5'
6793 5' -57 NC_001875.2 + 86725 0.67 0.807746
Target:  5'- cCGaCACUGcucGUCgCACAUGAaGGCgCGCa -3'
miRNA:   3'- -GC-GUGGCa--CAGgGUGUACUaCCG-GCG- -5'
6793 5' -57 NC_001875.2 + 67138 0.67 0.807746
Target:  5'- aGCGCCGUGUugcugcggcugUCUgcgcgggacaGCGUGGUGGacaCCGCg -3'
miRNA:   3'- gCGUGGCACA-----------GGG----------UGUACUACC---GGCG- -5'
6793 5' -57 NC_001875.2 + 5022 0.67 0.807746
Target:  5'- uGCGCCGccucgGUCuCCAUuau-UGGCUGCa -3'
miRNA:   3'- gCGUGGCa----CAG-GGUGuacuACCGGCG- -5'
6793 5' -57 NC_001875.2 + 59211 0.67 0.807746
Target:  5'- cCGCGCCGUuuggcGUgCCGCA----GGCCGUa -3'
miRNA:   3'- -GCGUGGCA-----CAgGGUGUacuaCCGGCG- -5'
6793 5' -57 NC_001875.2 + 83315 0.67 0.802439
Target:  5'- aGCACCGgcgucuuaaacgcgGUCUUgACGUGGUG-CCGCa -3'
miRNA:   3'- gCGUGGCa-------------CAGGG-UGUACUACcGGCG- -5'
6793 5' -57 NC_001875.2 + 12674 0.67 0.79887
Target:  5'- gCGCGCCGcGUUggCCGgGUG-UGGCgGCa -3'
miRNA:   3'- -GCGUGGCaCAG--GGUgUACuACCGgCG- -5'
6793 5' -57 NC_001875.2 + 86248 0.67 0.79887
Target:  5'- gCGCGCCGgagucgGgCCCGC-UGGacuUGGCgGCg -3'
miRNA:   3'- -GCGUGGCa-----CaGGGUGuACU---ACCGgCG- -5'
6793 5' -57 NC_001875.2 + 125469 0.67 0.797974
Target:  5'- cCGCGCgGUG-CCCgacgacgACAUcGUGGCCGa -3'
miRNA:   3'- -GCGUGgCACaGGG-------UGUAcUACCGGCg -5'
6793 5' -57 NC_001875.2 + 46396 0.67 0.789843
Target:  5'- gCGaCACgGUGUCCgACGUGGaugUGGacacguCCGCg -3'
miRNA:   3'- -GC-GUGgCACAGGgUGUACU---ACC------GGCG- -5'
6793 5' -57 NC_001875.2 + 23017 0.67 0.789843
Target:  5'- gCGCACCGUGUUCaGCGUGuUGGacaGUu -3'
miRNA:   3'- -GCGUGGCACAGGgUGUACuACCgg-CG- -5'
6793 5' -57 NC_001875.2 + 118674 0.67 0.780676
Target:  5'- aCGCucGCCGUGUUcggcgacgccuaCCGCGUGGUcgugucGCCGCu -3'
miRNA:   3'- -GCG--UGGCACAG------------GGUGUACUAc-----CGGCG- -5'
6793 5' -57 NC_001875.2 + 50759 0.68 0.771375
Target:  5'- uCGCaaGCCGUGUCCUuuACcgGcUGGCaGCu -3'
miRNA:   3'- -GCG--UGGCACAGGG--UGuaCuACCGgCG- -5'
6793 5' -57 NC_001875.2 + 345 0.68 0.761951
Target:  5'- gCGCGCCGcagacUGUCgauCUGCAcGuUGGCCGCg -3'
miRNA:   3'- -GCGUGGC-----ACAG---GGUGUaCuACCGGCG- -5'
6793 5' -57 NC_001875.2 + 99343 0.68 0.761951
Target:  5'- aGCGUCGUGUCCgCGCAacuUGGgCGCg -3'
miRNA:   3'- gCGUGGCACAGG-GUGUacuACCgGCG- -5'
6793 5' -57 NC_001875.2 + 83459 0.68 0.742768
Target:  5'- gGCACC-UGUCgCCGCGUcgGAcgGGCgCGCg -3'
miRNA:   3'- gCGUGGcACAG-GGUGUA--CUa-CCG-GCG- -5'
6793 5' -57 NC_001875.2 + 10138 0.68 0.733028
Target:  5'- aGUucgGgCGUGUUCCGCAagcgcggcgUGGUGGCCGa -3'
miRNA:   3'- gCG---UgGCACAGGGUGU---------ACUACCGGCg -5'
6793 5' -57 NC_001875.2 + 89382 0.68 0.733028
Target:  5'- uGCugCGUGgcUCgCCGCAgc--GGCCGCu -3'
miRNA:   3'- gCGugGCAC--AG-GGUGUacuaCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.