miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6794 3' -50.5 NC_001875.2 + 72324 0.66 0.991336
Target:  5'- ---aGUgCGCGUUUuuGCgGcGGCACa -3'
miRNA:   3'- uuaaCAaGCGCAAAggCGgCaCUGUG- -5'
6794 3' -50.5 NC_001875.2 + 37134 0.66 0.990057
Target:  5'- ---cGUUUGCGUcuUUCCGC-GUG-CGCa -3'
miRNA:   3'- uuaaCAAGCGCA--AAGGCGgCACuGUG- -5'
6794 3' -50.5 NC_001875.2 + 30103 0.66 0.990057
Target:  5'- --cUGUgCGCGcuguaCGCCGUGACGg -3'
miRNA:   3'- uuaACAaGCGCaaag-GCGGCACUGUg -5'
6794 3' -50.5 NC_001875.2 + 90703 0.66 0.990057
Target:  5'- gGGUUGccggCGCGg--CCGCCGgucaagcgcGACACg -3'
miRNA:   3'- -UUAACaa--GCGCaaaGGCGGCa--------CUGUG- -5'
6794 3' -50.5 NC_001875.2 + 22492 0.66 0.988634
Target:  5'- ---gGggCGCGUUUCCuuguucgcGUCGuUGACGCg -3'
miRNA:   3'- uuaaCaaGCGCAAAGG--------CGGC-ACUGUG- -5'
6794 3' -50.5 NC_001875.2 + 122690 0.66 0.98532
Target:  5'- ---aGUUgGCGUg--CGCCGUGgACACc -3'
miRNA:   3'- uuaaCAAgCGCAaagGCGGCAC-UGUG- -5'
6794 3' -50.5 NC_001875.2 + 86330 0.67 0.983408
Target:  5'- -uUUGg-CGCGUUggCUGCCGUGgagGCACu -3'
miRNA:   3'- uuAACaaGCGCAAa-GGCGGCAC---UGUG- -5'
6794 3' -50.5 NC_001875.2 + 54955 0.67 0.976542
Target:  5'- -uUUGcgCGCGcgUuuGCCG-GACGCg -3'
miRNA:   3'- uuAACaaGCGCaaAggCGGCaCUGUG- -5'
6794 3' -50.5 NC_001875.2 + 127972 0.68 0.964417
Target:  5'- -cUUGgcggCGCGgugCUGCCGUGcCACa -3'
miRNA:   3'- uuAACaa--GCGCaaaGGCGGCACuGUG- -5'
6794 3' -50.5 NC_001875.2 + 53880 0.7 0.928366
Target:  5'- uGUUGgUCGUGcggCCGCCGcGGCGCa -3'
miRNA:   3'- uUAACaAGCGCaaaGGCGGCaCUGUG- -5'
6794 3' -50.5 NC_001875.2 + 118582 0.7 0.928366
Target:  5'- uGAUUGUggacCGCGgcgCCGCCGUGuuuaACg -3'
miRNA:   3'- -UUAACAa---GCGCaaaGGCGGCACug--UG- -5'
6794 3' -50.5 NC_001875.2 + 123595 0.7 0.922676
Target:  5'- ------aCGCGUUUUCGUaCGUGGCGCa -3'
miRNA:   3'- uuaacaaGCGCAAAGGCG-GCACUGUG- -5'
6794 3' -50.5 NC_001875.2 + 40275 0.73 0.807239
Target:  5'- -----gUCGCGUUUCCGUaCGUGGCGg -3'
miRNA:   3'- uuaacaAGCGCAAAGGCG-GCACUGUg -5'
6794 3' -50.5 NC_001875.2 + 61879 0.83 0.307254
Target:  5'- uGUUGgUCGCGUUUUCGCCGUGGCcCg -3'
miRNA:   3'- uUAACaAGCGCAAAGGCGGCACUGuG- -5'
6794 3' -50.5 NC_001875.2 + 69923 1.09 0.007975
Target:  5'- aAAUUGUUCGCGUUUCCGCCGUGACACg -3'
miRNA:   3'- -UUAACAAGCGCAAAGGCGGCACUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.