miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6794 5' -57.3 NC_001875.2 + 37882 0.69 0.644029
Target:  5'- gCGGGCCGCGccaGCGGcuugcuGGCGCGGCa-- -3'
miRNA:   3'- aGCCCGGUGC---CGCUu-----UUGCGCUGguu -5'
6794 5' -57.3 NC_001875.2 + 129550 0.71 0.532105
Target:  5'- gCGcGGCCACGGCGc--GCGCGcAUCAc -3'
miRNA:   3'- aGC-CCGGUGCCGCuuuUGCGC-UGGUu -5'
6794 5' -57.3 NC_001875.2 + 100599 0.71 0.532105
Target:  5'- gCGGGCCG-GGCGccGGcCGCGGCCGc -3'
miRNA:   3'- aGCCCGGUgCCGCuuUU-GCGCUGGUu -5'
6794 5' -57.3 NC_001875.2 + 100900 0.71 0.542071
Target:  5'- cCGGGCgccgcaGCGcGCGGAGACGCGucGCCGc -3'
miRNA:   3'- aGCCCGg-----UGC-CGCUUUUGCGC--UGGUu -5'
6794 5' -57.3 NC_001875.2 + 11993 0.71 0.551092
Target:  5'- gUUGGGCgCGgguguggUGGCGA--GCGCGGCCAAc -3'
miRNA:   3'- -AGCCCG-GU-------GCCGCUuuUGCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 115099 0.7 0.579427
Target:  5'- cCGGGCUgucaaacacguauuACGGCGggGagauACGCGACa-- -3'
miRNA:   3'- aGCCCGG--------------UGCCGCuuU----UGCGCUGguu -5'
6794 5' -57.3 NC_001875.2 + 37047 0.7 0.602932
Target:  5'- aCGGcGCgugCACGcGCGcgGACGCGGCCAc -3'
miRNA:   3'- aGCC-CG---GUGC-CGCuuUUGCGCUGGUu -5'
6794 5' -57.3 NC_001875.2 + 47268 0.69 0.633749
Target:  5'- gCGGGUCACGacCGAGGACGCGcUCGAc -3'
miRNA:   3'- aGCCCGGUGCc-GCUUUUGCGCuGGUU- -5'
6794 5' -57.3 NC_001875.2 + 82948 0.69 0.643002
Target:  5'- cUCGGucGUCGCGGCGGGcGCguccucgGCGACCGAc -3'
miRNA:   3'- -AGCC--CGGUGCCGCUUuUG-------CGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 41820 0.71 0.51238
Target:  5'- cCGGcGCCGCGGCcaguuGCGCGuCCAGu -3'
miRNA:   3'- aGCC-CGGUGCCGcuuu-UGCGCuGGUU- -5'
6794 5' -57.3 NC_001875.2 + 92194 0.72 0.464494
Target:  5'- aCGGGCCAUuGCGcAAACGCcGCCAc -3'
miRNA:   3'- aGCCCGGUGcCGCuUUUGCGcUGGUu -5'
6794 5' -57.3 NC_001875.2 + 111784 0.72 0.464494
Target:  5'- gUCGcuGGUgACGGCGGugcACGCGGCCGAc -3'
miRNA:   3'- -AGC--CCGgUGCCGCUuu-UGCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 40084 0.79 0.194199
Target:  5'- aCGaGGCCGCGGCGcuGACGCG-CCAc -3'
miRNA:   3'- aGC-CCGGUGCCGCuuUUGCGCuGGUu -5'
6794 5' -57.3 NC_001875.2 + 61913 0.75 0.344462
Target:  5'- cCGuGUCACGGCGGAAACGCGAaCAAu -3'
miRNA:   3'- aGCcCGGUGCCGCUUUUGCGCUgGUU- -5'
6794 5' -57.3 NC_001875.2 + 41701 0.74 0.360186
Target:  5'- cUGGGCCAgGGCGuauGCGCGGCg-- -3'
miRNA:   3'- aGCCCGGUgCCGCuuuUGCGCUGguu -5'
6794 5' -57.3 NC_001875.2 + 50362 0.73 0.401639
Target:  5'- gUCGGGCCGCGcGCGccacuGAcCGCgGACCAGc -3'
miRNA:   3'- -AGCCCGGUGC-CGCu----UUuGCG-CUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 24078 0.73 0.427922
Target:  5'- uUUGGGCgGCGGCGuuGAguUGCGGCCu- -3'
miRNA:   3'- -AGCCCGgUGCCGCuuUU--GCGCUGGuu -5'
6794 5' -57.3 NC_001875.2 + 13902 0.72 0.455196
Target:  5'- aCGGGUCACGGCGucuACuGCGAgCGGg -3'
miRNA:   3'- aGCCCGGUGCCGCuuuUG-CGCUgGUU- -5'
6794 5' -57.3 NC_001875.2 + 65752 0.72 0.455196
Target:  5'- gCGGGCCuCGGCGuauucguGCGCGGCgGg -3'
miRNA:   3'- aGCCCGGuGCCGCuuu----UGCGCUGgUu -5'
6794 5' -57.3 NC_001875.2 + 74350 0.72 0.455196
Target:  5'- gUGGGCUuucaaacuagACGGCGu--GCGCGGCCGc -3'
miRNA:   3'- aGCCCGG----------UGCCGCuuuUGCGCUGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.