miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6795 3' -48.7 NC_001875.2 + 97640 0.66 0.999411
Target:  5'- uUUGACGaggagacaauggugCAAAUGCGCGACGccGACGg -3'
miRNA:   3'- -AGCUGCa-------------GUUUGUGCGCUGCu-UUGCg -5'
6795 3' -48.7 NC_001875.2 + 58728 0.66 0.999398
Target:  5'- uUCGACGgcuuuagcggccaCGAuugaggagcuguauGCGCGCGugGAGGCa- -3'
miRNA:   3'- -AGCUGCa------------GUU--------------UGUGCGCugCUUUGcg -5'
6795 3' -48.7 NC_001875.2 + 72557 0.66 0.999358
Target:  5'- -gGGCGcugCGGGCGCG-GGCGcGGGCGCu -3'
miRNA:   3'- agCUGCa--GUUUGUGCgCUGC-UUUGCG- -5'
6795 3' -48.7 NC_001875.2 + 42153 0.66 0.999358
Target:  5'- aCG-CGUCGGccguCGCGCGgucaaacguaaACGAcGCGCg -3'
miRNA:   3'- aGCuGCAGUUu---GUGCGC-----------UGCUuUGCG- -5'
6795 3' -48.7 NC_001875.2 + 76941 0.66 0.999358
Target:  5'- -aGACGUaugugcAACugGCGgACGAGucCGCg -3'
miRNA:   3'- agCUGCAgu----UUGugCGC-UGCUUu-GCG- -5'
6795 3' -48.7 NC_001875.2 + 23990 0.66 0.999358
Target:  5'- uUCGACcaaCucGCGCGCGuCGcaAGGCGCa -3'
miRNA:   3'- -AGCUGca-GuuUGUGCGCuGC--UUUGCG- -5'
6795 3' -48.7 NC_001875.2 + 45464 0.66 0.999358
Target:  5'- cUCGGCGcccgCAGcCGCGCGuCu-AGCGCg -3'
miRNA:   3'- -AGCUGCa---GUUuGUGCGCuGcuUUGCG- -5'
6795 3' -48.7 NC_001875.2 + 74195 0.66 0.999358
Target:  5'- gUGGCGUUuugcAACGCGCaacugggcgGGCGuuuGGCGCa -3'
miRNA:   3'- aGCUGCAGu---UUGUGCG---------CUGCu--UUGCG- -5'
6795 3' -48.7 NC_001875.2 + 98573 0.66 0.999358
Target:  5'- --uGCGUCAAGgGCGaCGGCuuuugcaacucGGAGCGCc -3'
miRNA:   3'- agcUGCAGUUUgUGC-GCUG-----------CUUUGCG- -5'
6795 3' -48.7 NC_001875.2 + 39324 0.66 0.999358
Target:  5'- aCG-CGcCGGGCGCGC-ACG-AGCGCc -3'
miRNA:   3'- aGCuGCaGUUUGUGCGcUGCuUUGCG- -5'
6795 3' -48.7 NC_001875.2 + 109128 0.66 0.999358
Target:  5'- gCGACGgcggCGGucUugGCGACGcagauaggcAAGCGCu -3'
miRNA:   3'- aGCUGCa---GUUu-GugCGCUGC---------UUUGCG- -5'
6795 3' -48.7 NC_001875.2 + 46582 0.66 0.999358
Target:  5'- aUUGAg--CAGACGCuuaaGCGACGAaaugAACGCg -3'
miRNA:   3'- -AGCUgcaGUUUGUG----CGCUGCU----UUGCG- -5'
6795 3' -48.7 NC_001875.2 + 28515 0.66 0.999358
Target:  5'- -aGcCGUCGcGCACGCGucgccCGgcACGCc -3'
miRNA:   3'- agCuGCAGUuUGUGCGCu----GCuuUGCG- -5'
6795 3' -48.7 NC_001875.2 + 11266 0.66 0.999358
Target:  5'- aUGACGUC-AAUugGCcGGCGcgcuCGCu -3'
miRNA:   3'- aGCUGCAGuUUGugCG-CUGCuuu-GCG- -5'
6795 3' -48.7 NC_001875.2 + 94769 0.66 0.999358
Target:  5'- gUCGucCGcCAAACACaGCGugGccGCGUc -3'
miRNA:   3'- -AGCu-GCaGUUUGUG-CGCugCuuUGCG- -5'
6795 3' -48.7 NC_001875.2 + 72930 0.66 0.999358
Target:  5'- cUUGGCGUCcgcggcuucguAGCGCGCGuucGCGGccugcaAACGCu -3'
miRNA:   3'- -AGCUGCAGu----------UUGUGCGC---UGCU------UUGCG- -5'
6795 3' -48.7 NC_001875.2 + 96981 0.66 0.999358
Target:  5'- -gGACGUCGuGCGCaaguugcguuGCGACGGGuguGgGCg -3'
miRNA:   3'- agCUGCAGUuUGUG----------CGCUGCUU---UgCG- -5'
6795 3' -48.7 NC_001875.2 + 90262 0.66 0.999358
Target:  5'- uUCGGCGUCuuuguuGGACaACGUcAUGAAcgaGCGCa -3'
miRNA:   3'- -AGCUGCAG------UUUG-UGCGcUGCUU---UGCG- -5'
6795 3' -48.7 NC_001875.2 + 103319 0.66 0.999358
Target:  5'- cCGGCGUgc--CGgGCGACGcguGCGCg -3'
miRNA:   3'- aGCUGCAguuuGUgCGCUGCuu-UGCG- -5'
6795 3' -48.7 NC_001875.2 + 100706 0.66 0.999358
Target:  5'- gCGgcGCGUUAAGCAUGCacauugcuGCGgcGCGCg -3'
miRNA:   3'- aGC--UGCAGUUUGUGCGc-------UGCuuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.