miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6795 5' -64.8 NC_001875.2 + 69238 0.66 0.524504
Target:  5'- aCGGCG-GCGUCgaacgGCGCGCUGggCCg -3'
miRNA:   3'- -GCCGCaCGCGGgcga-CGCGCGGCa-GG- -5'
6795 5' -64.8 NC_001875.2 + 54575 0.66 0.524504
Target:  5'- gCGGCGgccgcuuCGCCCgGCgGCGCGCCc--- -3'
miRNA:   3'- -GCCGCac-----GCGGG-CGaCGCGCGGcagg -5'
6795 5' -64.8 NC_001875.2 + 123437 0.66 0.524504
Target:  5'- gCGGCGUuaCGCagauCGCguuUGCGCGCgGUCa -3'
miRNA:   3'- -GCCGCAc-GCGg---GCG---ACGCGCGgCAGg -5'
6795 5' -64.8 NC_001875.2 + 121154 0.66 0.518938
Target:  5'- gGGCGUccagccguugcggcaGCGCCUGCgccaaGUGCaGUCCg -3'
miRNA:   3'- gCCGCA---------------CGCGGGCGacg--CGCGgCAGG- -5'
6795 5' -64.8 NC_001875.2 + 58092 0.66 0.51524
Target:  5'- gGcGCGUGCGCaCGUUGUuaGCGUCGUa- -3'
miRNA:   3'- gC-CGCACGCGgGCGACG--CGCGGCAgg -5'
6795 5' -64.8 NC_001875.2 + 40693 0.66 0.51524
Target:  5'- -cGCG-GCGCauuuggaaCCGCcGCGCGCgCGUCa -3'
miRNA:   3'- gcCGCaCGCG--------GGCGaCGCGCG-GCAGg -5'
6795 5' -64.8 NC_001875.2 + 41820 0.66 0.51524
Target:  5'- cCGGCGccGCGgCCaGUUGCGCGUCcaguugCCg -3'
miRNA:   3'- -GCCGCa-CGCgGG-CGACGCGCGGca----GG- -5'
6795 5' -64.8 NC_001875.2 + 114012 0.66 0.51524
Target:  5'- uCGGCGcccucGCGCaUgGCgGcCGCGCgGUCCa -3'
miRNA:   3'- -GCCGCa----CGCG-GgCGaC-GCGCGgCAGG- -5'
6795 5' -64.8 NC_001875.2 + 36811 0.66 0.51524
Target:  5'- uGcGCGUuacGCGCCgcggcaGUUGCGCGCCcgcgCCa -3'
miRNA:   3'- gC-CGCA---CGCGGg-----CGACGCGCGGca--GG- -5'
6795 5' -64.8 NC_001875.2 + 125989 0.66 0.51524
Target:  5'- -cGCGUGCugguGCaCUGCUacGCGgGCgCGUCCa -3'
miRNA:   3'- gcCGCACG----CG-GGCGA--CGCgCG-GCAGG- -5'
6795 5' -64.8 NC_001875.2 + 95736 0.66 0.51524
Target:  5'- uGaGCG-GCGCcgCCGCcGCGUGCUG-CCg -3'
miRNA:   3'- gC-CGCaCGCG--GGCGaCGCGCGGCaGG- -5'
6795 5' -64.8 NC_001875.2 + 100120 0.66 0.51524
Target:  5'- aGGCGUGUuaCaUGCUG-GCGCUGUUUg -3'
miRNA:   3'- gCCGCACGcgG-GCGACgCGCGGCAGG- -5'
6795 5' -64.8 NC_001875.2 + 68090 0.66 0.506043
Target:  5'- cCGaGCGcaauuucauUGUaagGCCCGUUGUGCaGCgCGUCCa -3'
miRNA:   3'- -GC-CGC---------ACG---CGGGCGACGCG-CG-GCAGG- -5'
6795 5' -64.8 NC_001875.2 + 21021 0.66 0.506043
Target:  5'- gCGGCGcaccagcGCGUCCacCUGCGCGgCGUUg -3'
miRNA:   3'- -GCCGCa------CGCGGGc-GACGCGCgGCAGg -5'
6795 5' -64.8 NC_001875.2 + 9049 0.66 0.506043
Target:  5'- cCGGCc-GCGCCgGUUucCGCGCCGguuUCCg -3'
miRNA:   3'- -GCCGcaCGCGGgCGAc-GCGCGGC---AGG- -5'
6795 5' -64.8 NC_001875.2 + 106967 0.66 0.506043
Target:  5'- --nCGUGCGUuuGUUGUGCGuuGUUUg -3'
miRNA:   3'- gccGCACGCGggCGACGCGCggCAGG- -5'
6795 5' -64.8 NC_001875.2 + 49571 0.66 0.506043
Target:  5'- uGuaGUG-GCCaagcaGCUGCGCGCCGa-- -3'
miRNA:   3'- gCcgCACgCGGg----CGACGCGCGGCagg -5'
6795 5' -64.8 NC_001875.2 + 17332 0.66 0.506043
Target:  5'- uGGCGguUGCG-CCGCcGCGCGaCCGcgUCa -3'
miRNA:   3'- gCCGC--ACGCgGGCGaCGCGC-GGCa-GG- -5'
6795 5' -64.8 NC_001875.2 + 58 0.66 0.506043
Target:  5'- uCGGCG-GCGgCgGCgaacgacaccaaUGaCGCGCCGcCCg -3'
miRNA:   3'- -GCCGCaCGCgGgCG------------AC-GCGCGGCaGG- -5'
6795 5' -64.8 NC_001875.2 + 62586 0.66 0.506043
Target:  5'- aCGGCucgagccGCGgCC-CaGCGCGCCGUUCg -3'
miRNA:   3'- -GCCGca-----CGCgGGcGaCGCGCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.