miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6796 3' -51.7 NC_001875.2 + 61979 0.66 0.977705
Target:  5'- gCAAACaaGACCUGCgCGGCgaCAUGAcGCg -3'
miRNA:   3'- -GUUUG--CUGGACGgGUCG--GUAUUuCGa -5'
6796 3' -51.7 NC_001875.2 + 50955 0.66 0.977705
Target:  5'- --cGCGACUUGCUCuGCCAcucUuuGGCg -3'
miRNA:   3'- guuUGCUGGACGGGuCGGU---AuuUCGa -5'
6796 3' -51.7 NC_001875.2 + 110258 0.66 0.977705
Target:  5'- uCGAACGGCUggGCCggcuGGCCGcGGAGCg -3'
miRNA:   3'- -GUUUGCUGGa-CGGg---UCGGUaUUUCGa -5'
6796 3' -51.7 NC_001875.2 + 71136 0.66 0.972304
Target:  5'- uGGGCGGCCUcaGCgCGGCCGcguuGGGCa -3'
miRNA:   3'- gUUUGCUGGA--CGgGUCGGUau--UUCGa -5'
6796 3' -51.7 NC_001875.2 + 125177 0.66 0.966019
Target:  5'- gAAGCGGCCguUGCCCAGauugcgCGUGcuGGGCa -3'
miRNA:   3'- gUUUGCUGG--ACGGGUCg-----GUAU--UUCGa -5'
6796 3' -51.7 NC_001875.2 + 60707 0.67 0.962525
Target:  5'- --cGCGGCCgcgcugaggccGCCCAGCCAc--AGCa -3'
miRNA:   3'- guuUGCUGGa----------CGGGUCGGUauuUCGa -5'
6796 3' -51.7 NC_001875.2 + 89732 0.67 0.962525
Target:  5'- -cAGCGGaCUGCgCCGGCCGUAcGAGUg -3'
miRNA:   3'- guUUGCUgGACG-GGUCGGUAU-UUCGa -5'
6796 3' -51.7 NC_001875.2 + 74363 0.67 0.95879
Target:  5'- cUAGACGGCgUGCgCGGCCGc--GGCg -3'
miRNA:   3'- -GUUUGCUGgACGgGUCGGUauuUCGa -5'
6796 3' -51.7 NC_001875.2 + 415 0.67 0.95879
Target:  5'- ---cCGACCUGUCCAGCUgcgcuuGCa -3'
miRNA:   3'- guuuGCUGGACGGGUCGGuauuu-CGa -5'
6796 3' -51.7 NC_001875.2 + 46266 0.67 0.958403
Target:  5'- aAAACuGGCUUgccGCCCAGCCcguugugAUGAGGCg -3'
miRNA:   3'- gUUUG-CUGGA---CGGGUCGG-------UAUUUCGa -5'
6796 3' -51.7 NC_001875.2 + 114758 0.67 0.954807
Target:  5'- --cGCGGCUUGCCC-GCC-UGAccAGCUu -3'
miRNA:   3'- guuUGCUGGACGGGuCGGuAUU--UCGA- -5'
6796 3' -51.7 NC_001875.2 + 49959 0.67 0.954807
Target:  5'- -cGACGACCgUGCac-GCCGUGGAGUa -3'
miRNA:   3'- guUUGCUGG-ACGgguCGGUAUUUCGa -5'
6796 3' -51.7 NC_001875.2 + 7552 0.67 0.95057
Target:  5'- -cAACGACCUGaCgCCGGCgGacGAGCg -3'
miRNA:   3'- guUUGCUGGAC-G-GGUCGgUauUUCGa -5'
6796 3' -51.7 NC_001875.2 + 52055 0.67 0.946077
Target:  5'- -cGACGACCcGCCCuaccuGCCc-GAAGCg -3'
miRNA:   3'- guUUGCUGGaCGGGu----CGGuaUUUCGa -5'
6796 3' -51.7 NC_001875.2 + 9327 0.68 0.941323
Target:  5'- -cGGCGAagCUGCCCGGCCGgaUGucGCc -3'
miRNA:   3'- guUUGCUg-GACGGGUCGGU--AUuuCGa -5'
6796 3' -51.7 NC_001875.2 + 588 0.68 0.941323
Target:  5'- aCGAACGACggcucgguuuCUGCCUcuuccucaguGGCCAUGuAGCg -3'
miRNA:   3'- -GUUUGCUG----------GACGGG----------UCGGUAUuUCGa -5'
6796 3' -51.7 NC_001875.2 + 101807 0.68 0.925476
Target:  5'- gCAAACaGCCcGCCCaAGCCGUuuuGCUg -3'
miRNA:   3'- -GUUUGcUGGaCGGG-UCGGUAuuuCGA- -5'
6796 3' -51.7 NC_001875.2 + 12197 0.68 0.925476
Target:  5'- ----aGGuuUGCCUGGCCGUAAAGUg -3'
miRNA:   3'- guuugCUggACGGGUCGGUAUUUCGa -5'
6796 3' -51.7 NC_001875.2 + 117314 0.68 0.919661
Target:  5'- aCAAGCGGCgUGCCC-GCCA---AGUUc -3'
miRNA:   3'- -GUUUGCUGgACGGGuCGGUauuUCGA- -5'
6796 3' -51.7 NC_001875.2 + 84375 0.69 0.912958
Target:  5'- --cGCGGCCUGCCggggcggcgucggUAGCCG--GAGCUu -3'
miRNA:   3'- guuUGCUGGACGG-------------GUCGGUauUUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.