miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6796 5' -49.3 NC_001875.2 + 110940 0.66 0.996782
Target:  5'- cGGGCUcaGGAAAggGAAacGGCGCUGu -3'
miRNA:   3'- cUUCGA--CCUUUaaCUUguCCGCGACc -5'
6796 5' -49.3 NC_001875.2 + 47107 0.66 0.996782
Target:  5'- --cGCUGGAAGc---GCGGGCGCa-- -3'
miRNA:   3'- cuuCGACCUUUaacuUGUCCGCGacc -5'
6796 5' -49.3 NC_001875.2 + 74137 0.66 0.996439
Target:  5'- aGAGCUGGAGuucgaGGGCGcGGCGCccgccgccgccagcuUGGa -3'
miRNA:   3'- cUUCGACCUUuaa--CUUGU-CCGCG---------------ACC- -5'
6796 5' -49.3 NC_001875.2 + 38737 0.66 0.995448
Target:  5'- uGGAGCcgcacUGGAacccgcaAAUUGAgcuGCAGGCGCa-- -3'
miRNA:   3'- -CUUCG-----ACCU-------UUAACU---UGUCCGCGacc -5'
6796 5' -49.3 NC_001875.2 + 127823 0.67 0.9929
Target:  5'- --cGCUGGAGcagucagacGGGCGcGGCGUUGGa -3'
miRNA:   3'- cuuCGACCUUuaa------CUUGU-CCGCGACC- -5'
6796 5' -49.3 NC_001875.2 + 28281 0.67 0.991796
Target:  5'- --uGCUGGAAuauuUUGAACcGGUGCa-- -3'
miRNA:   3'- cuuCGACCUUu---AACUUGuCCGCGacc -5'
6796 5' -49.3 NC_001875.2 + 124626 0.67 0.991796
Target:  5'- -cAGCUGGGccguGUUGGacacgaGCGGGuCGUUGGc -3'
miRNA:   3'- cuUCGACCUu---UAACU------UGUCC-GCGACC- -5'
6796 5' -49.3 NC_001875.2 + 31189 0.67 0.98765
Target:  5'- --cGCUGG-AAUUGGugGGG-GCUGa -3'
miRNA:   3'- cuuCGACCuUUAACUugUCCgCGACc -5'
6796 5' -49.3 NC_001875.2 + 55725 0.68 0.985957
Target:  5'- uGgcGCUGGAAAagGAGCGcuacGGCGCg-- -3'
miRNA:   3'- -CuuCGACCUUUaaCUUGU----CCGCGacc -5'
6796 5' -49.3 NC_001875.2 + 131535 0.68 0.979806
Target:  5'- uGAGC-GGAGcgcGGACgAGGUGCUGGa -3'
miRNA:   3'- cUUCGaCCUUuaaCUUG-UCCGCGACC- -5'
6796 5' -49.3 NC_001875.2 + 29793 0.69 0.974716
Target:  5'- --uGCgGGAc--UGuGCGGGCGCUGGc -3'
miRNA:   3'- cuuCGaCCUuuaACuUGUCCGCGACC- -5'
6796 5' -49.3 NC_001875.2 + 26536 0.7 0.949608
Target:  5'- uGAGCUGGcgcUUGAGuCGGcGUGCUGGc -3'
miRNA:   3'- cUUCGACCuuuAACUU-GUC-CGCGACC- -5'
6796 5' -49.3 NC_001875.2 + 79850 0.72 0.905263
Target:  5'- -cAGCUGGcuaauGUUGGGguGGCGCgUGGu -3'
miRNA:   3'- cuUCGACCuu---UAACUUguCCGCG-ACC- -5'
6796 5' -49.3 NC_001875.2 + 59708 0.74 0.835429
Target:  5'- uGGGCUGGcGAgcGAGCAGcggcucGCGCUGGa -3'
miRNA:   3'- cUUCGACCuUUaaCUUGUC------CGCGACC- -5'
6796 5' -49.3 NC_001875.2 + 67635 1.12 0.006224
Target:  5'- aGAAGCUGGAAAUUGAACAGGCGCUGGa -3'
miRNA:   3'- -CUUCGACCUUUAACUUGUCCGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.