miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 3' -49.1 NC_001875.2 + 6790 0.67 0.992591
Target:  5'- gGGCAUCAgcgacccgcAGAUCGGGUCGCUGaaccAGCu -3'
miRNA:   3'- gUUGUAGU---------UUUGGUUCGGCGACc---UCG- -5'
6797 3' -49.1 NC_001875.2 + 22759 0.67 0.992591
Target:  5'- cCAGCA-CAucACCGgcacacAGCgGCUGGuGCa -3'
miRNA:   3'- -GUUGUaGUuuUGGU------UCGgCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 52263 0.67 0.99192
Target:  5'- aAACGUCGAGGCCGuggagcGccuuuugaaaacaauGCCGCUGGccuuuGCg -3'
miRNA:   3'- gUUGUAGUUUUGGU------U---------------CGGCGACCu----CG- -5'
6797 3' -49.1 NC_001875.2 + 108847 0.67 0.991447
Target:  5'- cCAGCAugaccucguUCAGGAUgcAGUCGCUGGAaaGCg -3'
miRNA:   3'- -GUUGU---------AGUUUUGguUCGGCGACCU--CG- -5'
6797 3' -49.1 NC_001875.2 + 38680 0.67 0.990168
Target:  5'- --cCAUCAAGugC-GGCgGCgUGGGGCu -3'
miRNA:   3'- guuGUAGUUUugGuUCGgCG-ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 47265 0.67 0.990168
Target:  5'- cCAGCggGUCAcGACCGAGgaCGCgcucgacgUGGAGCu -3'
miRNA:   3'- -GUUG--UAGUuUUGGUUCg-GCG--------ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 66606 0.68 0.988743
Target:  5'- cCAGCAUUugcugguGAGCCccaagGAGCUgugcaagcgcauGCUGGAGCu -3'
miRNA:   3'- -GUUGUAGu------UUUGG-----UUCGG------------CGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 87658 0.68 0.988743
Target:  5'- -cAUAUCGcuauCCGAGCUGUUGGAccGCg -3'
miRNA:   3'- guUGUAGUuuu-GGUUCGGCGACCU--CG- -5'
6797 3' -49.1 NC_001875.2 + 46273 0.68 0.988743
Target:  5'- uCAACAUCucauAAGCC--GCCGCcauGAGCg -3'
miRNA:   3'- -GUUGUAGu---UUUGGuuCGGCGac-CUCG- -5'
6797 3' -49.1 NC_001875.2 + 39851 0.68 0.987163
Target:  5'- aUAACAgCAAAAUUAGGaCCGCUGuuGCg -3'
miRNA:   3'- -GUUGUaGUUUUGGUUC-GGCGACcuCG- -5'
6797 3' -49.1 NC_001875.2 + 87117 0.68 0.987163
Target:  5'- aCAACAUUGAAAUUucGCUGCcGGuGCu -3'
miRNA:   3'- -GUUGUAGUUUUGGuuCGGCGaCCuCG- -5'
6797 3' -49.1 NC_001875.2 + 130617 0.68 0.985417
Target:  5'- gGGCGUCGGGAUCcuGCaCGCcgaucaGGAGCa -3'
miRNA:   3'- gUUGUAGUUUUGGuuCG-GCGa-----CCUCG- -5'
6797 3' -49.1 NC_001875.2 + 116452 0.68 0.985417
Target:  5'- ---uGUCGAGcGCUuucauAAGCuCGCUGGAGCu -3'
miRNA:   3'- guugUAGUUU-UGG-----UUCG-GCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 49924 0.68 0.984286
Target:  5'- --uCGUCGGAGCCGcGCgCGCUaaucagcuggucgucGGAGCu -3'
miRNA:   3'- guuGUAGUUUUGGUuCG-GCGA---------------CCUCG- -5'
6797 3' -49.1 NC_001875.2 + 108246 0.68 0.983496
Target:  5'- -cGCGUCAa---CGGGCUGCUGGccaAGCa -3'
miRNA:   3'- guUGUAGUuuugGUUCGGCGACC---UCG- -5'
6797 3' -49.1 NC_001875.2 + 123116 0.68 0.983496
Target:  5'- cCAACA--AAAACgAGguacugcucGCCGUUGGAGCa -3'
miRNA:   3'- -GUUGUagUUUUGgUU---------CGGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 108958 0.68 0.983496
Target:  5'- cCAACugCAAGAauuggccgaCAAGCUGCUGGAcGCa -3'
miRNA:   3'- -GUUGuaGUUUUg--------GUUCGGCGACCU-CG- -5'
6797 3' -49.1 NC_001875.2 + 112681 0.68 0.983496
Target:  5'- aAAC-UCGAGACguguguacagCGAGCUGCUGGccAGCg -3'
miRNA:   3'- gUUGuAGUUUUG----------GUUCGGCGACC--UCG- -5'
6797 3' -49.1 NC_001875.2 + 19849 0.68 0.983496
Target:  5'- aCAGCGcgCAAGACUcGGCCGCgucgcGGcGCg -3'
miRNA:   3'- -GUUGUa-GUUUUGGuUCGGCGa----CCuCG- -5'
6797 3' -49.1 NC_001875.2 + 115635 0.68 0.981389
Target:  5'- cCGAC-UCAAAcaCGGGCCGCacggUGGAGUg -3'
miRNA:   3'- -GUUGuAGUUUugGUUCGGCG----ACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.