miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 5' -57 NC_001875.2 + 74501 0.67 0.808556
Target:  5'- -cGGUUUcgcCGCGCGCAGCgCUGCCGc -3'
miRNA:   3'- cuCUAGAu--GCGCGCGUUGgGGUGGCa -5'
6797 5' -57 NC_001875.2 + 112686 0.67 0.808556
Target:  5'- gGAGAUCUuuucuaaaaACGUGuCGCugacGGCgCCGCCGUg -3'
miRNA:   3'- -CUCUAGA---------UGCGC-GCG----UUGgGGUGGCA- -5'
6797 5' -57 NC_001875.2 + 74143 0.67 0.808556
Target:  5'- gGAGuUCga-GgGCGCGGCgCCCGCCGc -3'
miRNA:   3'- -CUCuAGaugCgCGCGUUG-GGGUGGCa -5'
6797 5' -57 NC_001875.2 + 51219 0.67 0.79054
Target:  5'- --cGUCgaGCGCGCGUuccgcGCgCCCACCGUg -3'
miRNA:   3'- cucUAGa-UGCGCGCGu----UG-GGGUGGCA- -5'
6797 5' -57 NC_001875.2 + 57776 0.67 0.79054
Target:  5'- cGAGGg--GCGCGCaCAAUCCaCGCCGa -3'
miRNA:   3'- -CUCUagaUGCGCGcGUUGGG-GUGGCa -5'
6797 5' -57 NC_001875.2 + 63272 0.67 0.781311
Target:  5'- cGGcgCcACGCgguGCGCGACCgCCGCCGc -3'
miRNA:   3'- cUCuaGaUGCG---CGCGUUGG-GGUGGCa -5'
6797 5' -57 NC_001875.2 + 89542 0.67 0.781311
Target:  5'- cGGGAUCgucuaUACGCacGCGCAGCC-UGCCGUu -3'
miRNA:   3'- -CUCUAG-----AUGCG--CGCGUUGGgGUGGCA- -5'
6797 5' -57 NC_001875.2 + 109999 0.67 0.770058
Target:  5'- -cGGUCgguggcguugacGCGCGCGCAGCUCgACCa- -3'
miRNA:   3'- cuCUAGa-----------UGCGCGCGUUGGGgUGGca -5'
6797 5' -57 NC_001875.2 + 42295 0.67 0.762456
Target:  5'- cAGG-CUGCGCGUGCGuauagacgAUCCCGCCu- -3'
miRNA:   3'- cUCUaGAUGCGCGCGU--------UGGGGUGGca -5'
6797 5' -57 NC_001875.2 + 7280 0.67 0.762456
Target:  5'- -cGGUgUGC-CGCcaaaGCGACCCCGCCGc -3'
miRNA:   3'- cuCUAgAUGcGCG----CGUUGGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 82173 0.68 0.743134
Target:  5'- cGGGcggUACGUGCGCAACCgCCGCgGg -3'
miRNA:   3'- -CUCuagAUGCGCGCGUUGG-GGUGgCa -5'
6797 5' -57 NC_001875.2 + 21995 0.68 0.743134
Target:  5'- ------aACGCGCGCAGCaaauCCGCCGg -3'
miRNA:   3'- cucuagaUGCGCGCGUUGg---GGUGGCa -5'
6797 5' -57 NC_001875.2 + 98792 0.68 0.733321
Target:  5'- cGGAacgCUaucGCGCgGCGCGGCgCCCGCCGc -3'
miRNA:   3'- cUCUa--GA---UGCG-CGCGUUG-GGGUGGCa -5'
6797 5' -57 NC_001875.2 + 30936 0.68 0.72342
Target:  5'- cGAGcGUCUccGCGCGCuGCGGCgCCCggACCGg -3'
miRNA:   3'- -CUC-UAGA--UGCGCG-CGUUG-GGG--UGGCa -5'
6797 5' -57 NC_001875.2 + 34414 0.68 0.713439
Target:  5'- uGAGGUUUACGUaCGCggUCgCCGCCGc -3'
miRNA:   3'- -CUCUAGAUGCGcGCGuuGG-GGUGGCa -5'
6797 5' -57 NC_001875.2 + 63704 0.68 0.703388
Target:  5'- cGAGGU--GCGCGUGauuGCCUCGCCGg -3'
miRNA:   3'- -CUCUAgaUGCGCGCgu-UGGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 119371 0.68 0.703388
Target:  5'- --cAUCUACGaCGCGCAGuuuCCCC-CCGa -3'
miRNA:   3'- cucUAGAUGC-GCGCGUU---GGGGuGGCa -5'
6797 5' -57 NC_001875.2 + 81916 0.69 0.652404
Target:  5'- -uGAUUaGCGCGCGCGGCUCCGaCGa -3'
miRNA:   3'- cuCUAGaUGCGCGCGUUGGGGUgGCa -5'
6797 5' -57 NC_001875.2 + 71946 0.69 0.652404
Target:  5'- -cGcgCUcCGCGCGCAGCCUguCGCCGc -3'
miRNA:   3'- cuCuaGAuGCGCGCGUUGGG--GUGGCa -5'
6797 5' -57 NC_001875.2 + 18293 0.7 0.642123
Target:  5'- aAGGccgCUuCGCGCGCuuauuGGCCCCGCCGc -3'
miRNA:   3'- cUCUa--GAuGCGCGCG-----UUGGGGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.