miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6798 3' -58.3 NC_001875.2 + 63076 0.66 0.746328
Target:  5'- -uGUCCgAAGGcuGGUUGUGCAccAGCGUg -3'
miRNA:   3'- cuCGGGgUUCC--UCGACACGU--UCGCGu -5'
6798 3' -58.3 NC_001875.2 + 54726 0.66 0.746328
Target:  5'- cGGGCgUgGacAGGuAGCcGUGCGGGCGCAc -3'
miRNA:   3'- -CUCGgGgU--UCC-UCGaCACGUUCGCGU- -5'
6798 3' -58.3 NC_001875.2 + 91865 0.66 0.736441
Target:  5'- cGGGCCCCcAGG-GCgccUGCuGGUGCGg -3'
miRNA:   3'- -CUCGGGGuUCCuCGac-ACGuUCGCGU- -5'
6798 3' -58.3 NC_001875.2 + 76326 0.67 0.665148
Target:  5'- cGAGCCgCCAucGAGCagGUGCu-GCGCc -3'
miRNA:   3'- -CUCGG-GGUucCUCGa-CACGuuCGCGu -5'
6798 3' -58.3 NC_001875.2 + 68626 0.67 0.654779
Target:  5'- -cGCCCCAAGcAGCguugcuagaUGUGCAaagugaAGCGCu -3'
miRNA:   3'- cuCGGGGUUCcUCG---------ACACGU------UCGCGu -5'
6798 3' -58.3 NC_001875.2 + 120481 0.68 0.582144
Target:  5'- cAGCCCCugcuGGAGgUGUuucGCAAccGCGCAg -3'
miRNA:   3'- cUCGGGGuu--CCUCgACA---CGUU--CGCGU- -5'
6798 3' -58.3 NC_001875.2 + 122161 0.68 0.582144
Target:  5'- cGAGCCCCAAcGGAGCgGUGUAccUGUu -3'
miRNA:   3'- -CUCGGGGUU-CCUCGaCACGUucGCGu -5'
6798 3' -58.3 NC_001875.2 + 49331 0.69 0.550402
Target:  5'- cGGGCcgCCCGAGGAGCgcuacauUGUGUuccuaaacguaAAGCGCGc -3'
miRNA:   3'- -CUCG--GGGUUCCUCG-------ACACG-----------UUCGCGU- -5'
6798 3' -58.3 NC_001875.2 + 32555 0.69 0.531208
Target:  5'- -cGCCgCCGAGGAGCgGcUGCAGcagugccgcGCGCAc -3'
miRNA:   3'- cuCGG-GGUUCCUCGaC-ACGUU---------CGCGU- -5'
6798 3' -58.3 NC_001875.2 + 68907 0.7 0.511272
Target:  5'- cGAGUgUCGAGucaacGAGCUGUGCGAGgGCc -3'
miRNA:   3'- -CUCGgGGUUC-----CUCGACACGUUCgCGu -5'
6798 3' -58.3 NC_001875.2 + 40460 0.72 0.40821
Target:  5'- cAGCCCCGAGG-GC-GUGguGGUGCc -3'
miRNA:   3'- cUCGGGGUUCCuCGaCACguUCGCGu -5'
6798 3' -58.3 NC_001875.2 + 57397 0.72 0.399493
Target:  5'- uGAGgCCgAAGGGGCUGcuuaUGCAGGCgGCGu -3'
miRNA:   3'- -CUCgGGgUUCCUCGAC----ACGUUCG-CGU- -5'
6798 3' -58.3 NC_001875.2 + 29778 0.76 0.233698
Target:  5'- -cGCCCCAaaugaucgugcGGGA-CUGUGCGGGCGCu -3'
miRNA:   3'- cuCGGGGU-----------UCCUcGACACGUUCGCGu -5'
6798 3' -58.3 NC_001875.2 + 66620 1.08 0.001384
Target:  5'- uGAGCCCCAAGGAGCUGUGCAAGCGCAu -3'
miRNA:   3'- -CUCGGGGUUCCUCGACACGUUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.