miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6798 5' -51.6 NC_001875.2 + 33623 0.66 0.982403
Target:  5'- gUCCGUcGGCCGccGGGcaGUUGCAGCc -3'
miRNA:   3'- -AGGCA-CUGGUuuCUUugCGACGUCGa -5'
6798 5' -51.6 NC_001875.2 + 124058 0.66 0.982403
Target:  5'- -aCGUGGCaCAAcaacuuguuGAAACuGUUGCAGCUg -3'
miRNA:   3'- agGCACUG-GUUu--------CUUUG-CGACGUCGA- -5'
6798 5' -51.6 NC_001875.2 + 28924 0.66 0.980233
Target:  5'- aCCGUGGCCGcguauuucGAGAGugggGCGUguacggccGCGGCUu -3'
miRNA:   3'- aGGCACUGGU--------UUCUU----UGCGa-------CGUCGA- -5'
6798 5' -51.6 NC_001875.2 + 10870 0.66 0.980233
Target:  5'- gCgGUGGCCGcgucGGugGCGCUGCcGCg -3'
miRNA:   3'- aGgCACUGGUu---UCuuUGCGACGuCGa -5'
6798 5' -51.6 NC_001875.2 + 112178 0.66 0.979545
Target:  5'- gCUGUGguccugggcacGCCAGGGcAucguuggggucuacGCGCUGCAGCg -3'
miRNA:   3'- aGGCAC-----------UGGUUUCuU--------------UGCGACGUCGa -5'
6798 5' -51.6 NC_001875.2 + 62452 0.66 0.979312
Target:  5'- gUCGUGACCAcgugcguuucgguGGAcGGCGC-GCAGCg -3'
miRNA:   3'- aGGCACUGGUu------------UCU-UUGCGaCGUCGa -5'
6798 5' -51.6 NC_001875.2 + 52299 0.66 0.97787
Target:  5'- gCCGcUGGCCuuu---GCGCUGUGGCg -3'
miRNA:   3'- aGGC-ACUGGuuucuuUGCGACGUCGa -5'
6798 5' -51.6 NC_001875.2 + 2303 0.66 0.97787
Target:  5'- gCCGUGGCC------GCGC-GCAGCUc -3'
miRNA:   3'- aGGCACUGGuuucuuUGCGaCGUCGA- -5'
6798 5' -51.6 NC_001875.2 + 86127 0.66 0.97787
Target:  5'- -aCGUGGCCAucGGcagugcgcGGCGCgcGCGGCg -3'
miRNA:   3'- agGCACUGGUuuCU--------UUGCGa-CGUCGa -5'
6798 5' -51.6 NC_001875.2 + 36561 0.66 0.97787
Target:  5'- cCCGUGugCAuaccGACGCacGCGGCg -3'
miRNA:   3'- aGGCACugGUuucuUUGCGa-CGUCGa -5'
6798 5' -51.6 NC_001875.2 + 26232 0.66 0.975304
Target:  5'- -aCGUGcaACCGcucuuGGCGCUGCGGCg -3'
miRNA:   3'- agGCAC--UGGUuucu-UUGCGACGUCGa -5'
6798 5' -51.6 NC_001875.2 + 95232 0.66 0.975304
Target:  5'- aUCgGUgGugCAAGGGcGACGCgcaGCGGCUg -3'
miRNA:   3'- -AGgCA-CugGUUUCU-UUGCGa--CGUCGA- -5'
6798 5' -51.6 NC_001875.2 + 99977 0.66 0.975304
Target:  5'- aCUGuUGGCCAcAGAgcggAGCGCUGuUAGCg -3'
miRNA:   3'- aGGC-ACUGGUuUCU----UUGCGAC-GUCGa -5'
6798 5' -51.6 NC_001875.2 + 936 0.66 0.972528
Target:  5'- gCCGUGACCGGAcggcuguuGAAcuCGCUG-AGCa -3'
miRNA:   3'- aGGCACUGGUUU--------CUUu-GCGACgUCGa -5'
6798 5' -51.6 NC_001875.2 + 98324 0.66 0.972528
Target:  5'- aUCCGUucaacGugCAcauguuGGCGCUGCGGCa -3'
miRNA:   3'- -AGGCA-----CugGUuucu--UUGCGACGUCGa -5'
6798 5' -51.6 NC_001875.2 + 3024 0.66 0.972238
Target:  5'- gCCGUGcaaguuguacacGCCGuugggcagcgcguAAGAGGCGC-GCAGCg -3'
miRNA:   3'- aGGCAC------------UGGU-------------UUCUUUGCGaCGUCGa -5'
6798 5' -51.6 NC_001875.2 + 55722 0.67 0.969533
Target:  5'- -aCGUGGCgcuggaAAAGGAGCGCUaCGGCg -3'
miRNA:   3'- agGCACUGg-----UUUCUUUGCGAcGUCGa -5'
6798 5' -51.6 NC_001875.2 + 93417 0.67 0.966312
Target:  5'- gCCGUuua-GAAGAGGCGCUGCacGGCg -3'
miRNA:   3'- aGGCAcuggUUUCUUUGCGACG--UCGa -5'
6798 5' -51.6 NC_001875.2 + 46937 0.67 0.962858
Target:  5'- cCCGUGcugcgcuacGCCAAGGuuGUGCUGCuGCa -3'
miRNA:   3'- aGGCAC---------UGGUUUCuuUGCGACGuCGa -5'
6798 5' -51.6 NC_001875.2 + 41341 0.67 0.962858
Target:  5'- gCCGUGcaagugggccgcGCgCAGuuuGAAcgcGCGCUGCAGCg -3'
miRNA:   3'- aGGCAC------------UG-GUUu--CUU---UGCGACGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.