miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6799 3' -61.1 NC_001875.2 + 49870 0.66 0.623613
Target:  5'- cGCCuUGC-CGGCGCCAaccaaguggucgucgAGCuGCgcgUGCu -3'
miRNA:   3'- aCGG-ACGcGCCGCGGU---------------UCG-CGa--ACGu -5'
6799 3' -61.1 NC_001875.2 + 91694 0.66 0.623613
Target:  5'- uUGCCggccGUGCGGUGCCAgcccauggaggugacGGcCGUcgGCAa -3'
miRNA:   3'- -ACGGa---CGCGCCGCGGU---------------UC-GCGaaCGU- -5'
6799 3' -61.1 NC_001875.2 + 13371 0.66 0.623613
Target:  5'- aGCUggUGCGCaccguuucuacgcacGGCaCCAGGCGCgcUUGCAc -3'
miRNA:   3'- aCGG--ACGCG---------------CCGcGGUUCGCG--AACGU- -5'
6799 3' -61.1 NC_001875.2 + 25376 0.66 0.619541
Target:  5'- aGCCgucaacguugGCcCGGCGCCGAuuGCGCUcacaaaggacUGCGc -3'
miRNA:   3'- aCGGa---------CGcGCCGCGGUU--CGCGA----------ACGU- -5'
6799 3' -61.1 NC_001875.2 + 7127 0.66 0.619541
Target:  5'- cGCCacGCGCcGCuuGCCAGGCGCguugGCc -3'
miRNA:   3'- aCGGa-CGCGcCG--CGGUUCGCGaa--CGu -5'
6799 3' -61.1 NC_001875.2 + 63715 0.66 0.619541
Target:  5'- uUGUCgGuCGCGGCGacggCGGGCGCUUcGCc -3'
miRNA:   3'- -ACGGaC-GCGCCGCg---GUUCGCGAA-CGu -5'
6799 3' -61.1 NC_001875.2 + 91878 0.66 0.619541
Target:  5'- cGCCUGCugguGCGGCGgCGGGuCGg--GCAa -3'
miRNA:   3'- aCGGACG----CGCCGCgGUUC-GCgaaCGU- -5'
6799 3' -61.1 NC_001875.2 + 41523 0.66 0.619541
Target:  5'- cGUUUGgGCGGCGuugucgugaCCGAcgccugcaacuuGCGCUUGCGc -3'
miRNA:   3'- aCGGACgCGCCGC---------GGUU------------CGCGAACGU- -5'
6799 3' -61.1 NC_001875.2 + 55715 0.66 0.618524
Target:  5'- cGCaUUGaCGUGGCGCUggaaaagGAGCGCUacgGCGc -3'
miRNA:   3'- aCG-GAC-GCGCCGCGG-------UUCGCGAa--CGU- -5'
6799 3' -61.1 NC_001875.2 + 16939 0.66 0.609372
Target:  5'- cGCaucgGCGCGuuGCGCCAcgugaccaccAGCGCUuuuuguuugUGCAg -3'
miRNA:   3'- aCGga--CGCGC--CGCGGU----------UCGCGA---------ACGU- -5'
6799 3' -61.1 NC_001875.2 + 72629 0.66 0.609372
Target:  5'- gGCCUGCGgcaCGCCAaacGGCGCggGUAa -3'
miRNA:   3'- aCGGACGCgccGCGGU---UCGCGaaCGU- -5'
6799 3' -61.1 NC_001875.2 + 115749 0.66 0.609372
Target:  5'- aUGuCCUaGCgGCGuGCGCCAaaccGGCGCcgugUGCGu -3'
miRNA:   3'- -AC-GGA-CG-CGC-CGCGGU----UCGCGa---ACGU- -5'
6799 3' -61.1 NC_001875.2 + 9634 0.66 0.609372
Target:  5'- cUGCgUGCGC-GCGCCGuGCGUguuucGCGa -3'
miRNA:   3'- -ACGgACGCGcCGCGGUuCGCGaa---CGU- -5'
6799 3' -61.1 NC_001875.2 + 100580 0.66 0.609372
Target:  5'- cGUCUGCgucgacgcguacGCGG-GCCGGGCGCcgGCc -3'
miRNA:   3'- aCGGACG------------CGCCgCGGUUCGCGaaCGu -5'
6799 3' -61.1 NC_001875.2 + 17341 0.66 0.609372
Target:  5'- cGCCgccGCGCGaccGCGUCAgAGUGCUgccGCAc -3'
miRNA:   3'- aCGGa--CGCGC---CGCGGU-UCGCGAa--CGU- -5'
6799 3' -61.1 NC_001875.2 + 106985 0.66 0.609372
Target:  5'- uUGUUUGUGCGGUGUUcguGCGUUUGUu -3'
miRNA:   3'- -ACGGACGCGCCGCGGuu-CGCGAACGu -5'
6799 3' -61.1 NC_001875.2 + 106864 0.66 0.609372
Target:  5'- uUGUUUGUGCGGUGUUcguGCGUUUGUu -3'
miRNA:   3'- -ACGGACGCGCCGCGGuu-CGCGAACGu -5'
6799 3' -61.1 NC_001875.2 + 52352 0.66 0.609372
Target:  5'- gUGCg-GCGCGugccGCGCCAgcguccaagAGCGCaagUGCAg -3'
miRNA:   3'- -ACGgaCGCGC----CGCGGU---------UCGCGa--ACGU- -5'
6799 3' -61.1 NC_001875.2 + 113666 0.66 0.609372
Target:  5'- cGCCgGCaccgccacagugGCGGCGUCGcGCGCgccGCAc -3'
miRNA:   3'- aCGGaCG------------CGCCGCGGUuCGCGaa-CGU- -5'
6799 3' -61.1 NC_001875.2 + 62337 0.66 0.607339
Target:  5'- cGCCaguuuuaaguggGCGCGGCGCCAguuugGGuCGCgcGCc -3'
miRNA:   3'- aCGGa-----------CGCGCCGCGGU-----UC-GCGaaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.