miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6799 5' -56.9 NC_001875.2 + 100728 0.66 0.840788
Target:  5'- uGCUGCGGCGCgCGGCacGCGUuCG-UUAa -3'
miRNA:   3'- -UGACGUCGCG-GUCG--CGCAuGCuAGUg -5'
6799 5' -56.9 NC_001875.2 + 23180 0.66 0.840788
Target:  5'- gGCUGCGG-GCaCGGC-CGUugGCGGUUGCa -3'
miRNA:   3'- -UGACGUCgCG-GUCGcGCA--UGCUAGUG- -5'
6799 5' -56.9 NC_001875.2 + 49540 0.66 0.840788
Target:  5'- aAUUGCGcgccGCGCCAGgGCGUcguguuguggAUGAgCACg -3'
miRNA:   3'- -UGACGU----CGCGGUCgCGCA----------UGCUaGUG- -5'
6799 5' -56.9 NC_001875.2 + 43597 0.66 0.840788
Target:  5'- gGCgGCAGCGgCGGCGCGcgcCGcUUGCg -3'
miRNA:   3'- -UGaCGUCGCgGUCGCGCau-GCuAGUG- -5'
6799 5' -56.9 NC_001875.2 + 128298 0.66 0.840788
Target:  5'- cGCgccaCGGCGCCGGUGaCGUGCGccaaaugCGCa -3'
miRNA:   3'- -UGac--GUCGCGGUCGC-GCAUGCua-----GUG- -5'
6799 5' -56.9 NC_001875.2 + 86138 0.66 0.832432
Target:  5'- --gGCAGUGCgCGGCGCGcgcgGCGAgaUgACg -3'
miRNA:   3'- ugaCGUCGCG-GUCGCGCa---UGCU--AgUG- -5'
6799 5' -56.9 NC_001875.2 + 75584 0.66 0.832432
Target:  5'- --cGCuGGCGUCGGCGUcgGCGAUgGCg -3'
miRNA:   3'- ugaCG-UCGCGGUCGCGcaUGCUAgUG- -5'
6799 5' -56.9 NC_001875.2 + 46220 0.66 0.827329
Target:  5'- --gGCGGCGCUgcgaacgauaucacaAGCGCGUugGuggaggCGCu -3'
miRNA:   3'- ugaCGUCGCGG---------------UCGCGCAugCua----GUG- -5'
6799 5' -56.9 NC_001875.2 + 68544 0.66 0.82389
Target:  5'- aGCaGCGGUuuGCCGcCGCGgcggcgGCGGUCGCg -3'
miRNA:   3'- -UGaCGUCG--CGGUcGCGCa-----UGCUAGUG- -5'
6799 5' -56.9 NC_001875.2 + 95309 0.66 0.82389
Target:  5'- -gUGC-GCGCCAGCGcCGUuugGCGAaacaUCAa -3'
miRNA:   3'- ugACGuCGCGGUCGC-GCA---UGCU----AGUg -5'
6799 5' -56.9 NC_001875.2 + 29086 0.66 0.82389
Target:  5'- cGCUGCAGCGCUcgugcaaaGGCcGCGcagACuuuaaGGUCGCu -3'
miRNA:   3'- -UGACGUCGCGG--------UCG-CGCa--UG-----CUAGUG- -5'
6799 5' -56.9 NC_001875.2 + 91882 0.66 0.82389
Target:  5'- uGCUGguGCGgCGGCGgGU-CGggCAa -3'
miRNA:   3'- -UGACguCGCgGUCGCgCAuGCuaGUg -5'
6799 5' -56.9 NC_001875.2 + 84406 0.66 0.821292
Target:  5'- aGCUuCGGCGgCGGCGCGUAUaggugccaucggcgGAUCGg -3'
miRNA:   3'- -UGAcGUCGCgGUCGCGCAUG--------------CUAGUg -5'
6799 5' -56.9 NC_001875.2 + 121446 0.66 0.815168
Target:  5'- -gUGCcGCGCCacGGCGCGgcgGCGuUCAa -3'
miRNA:   3'- ugACGuCGCGG--UCGCGCa--UGCuAGUg -5'
6799 5' -56.9 NC_001875.2 + 129756 0.66 0.815168
Target:  5'- cGCUgaGCAGCGUacuGCGCGgguCGGUUGCc -3'
miRNA:   3'- -UGA--CGUCGCGgu-CGCGCau-GCUAGUG- -5'
6799 5' -56.9 NC_001875.2 + 95520 0.66 0.815168
Target:  5'- cGCgcaaCAGCcCCAGCGCGg--GAUCGCa -3'
miRNA:   3'- -UGac--GUCGcGGUCGCGCaugCUAGUG- -5'
6799 5' -56.9 NC_001875.2 + 91181 0.66 0.815168
Target:  5'- cACaGCGGCGCUuGCGUGUuguUGGUCGg -3'
miRNA:   3'- -UGaCGUCGCGGuCGCGCAu--GCUAGUg -5'
6799 5' -56.9 NC_001875.2 + 89342 0.66 0.814286
Target:  5'- uUUGCGGCGCaCGcggacgacggcguGCGCGUGCGcguGUUGCu -3'
miRNA:   3'- uGACGUCGCG-GU-------------CGCGCAUGC---UAGUG- -5'
6799 5' -56.9 NC_001875.2 + 37567 0.66 0.806274
Target:  5'- cGCgGCAucgaguggauGCGCCGGCGCGaGCGc-CGCg -3'
miRNA:   3'- -UGaCGU----------CGCGGUCGCGCaUGCuaGUG- -5'
6799 5' -56.9 NC_001875.2 + 102566 0.66 0.806274
Target:  5'- gACcGCGcccCGCCGGCGCGgucgGCGGcCGCg -3'
miRNA:   3'- -UGaCGUc--GCGGUCGCGCa---UGCUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.