miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6800 3' -55.9 NC_001875.2 + 39658 0.66 0.868262
Target:  5'- -cGCGAGuuuGGGCCGgc-GG-CGCGCGGc -3'
miRNA:   3'- uaCGUUC---UCCGGCaguUCaGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 2495 0.66 0.860532
Target:  5'- uUGUAAc-GGCCGUCAugcGGcCGCGUAGu -3'
miRNA:   3'- uACGUUcuCCGGCAGU---UCaGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 54139 0.66 0.852585
Target:  5'- cGUGCAAGcGGaCGgCGgcAGUCGCGCAa -3'
miRNA:   3'- -UACGUUCuCCgGCaGU--UCAGCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 49887 0.66 0.852585
Target:  5'- --cCAAGuGGUCGUCGAGcUGCGCGu -3'
miRNA:   3'- uacGUUCuCCGGCAGUUCaGCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 82933 0.66 0.844428
Target:  5'- uUGCAAGuccGUCGUCucGGUCGuCGCGGc -3'
miRNA:   3'- uACGUUCuc-CGGCAGu-UCAGC-GCGUC- -5'
6800 3' -55.9 NC_001875.2 + 112221 0.66 0.844428
Target:  5'- cUGCAGcGAGGCgUGgaaaAAGUCGUGCAa -3'
miRNA:   3'- uACGUU-CUCCG-GCag--UUCAGCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 102008 0.66 0.844428
Target:  5'- -gGCAcGGGGCCGUC-GGcCGUGCc- -3'
miRNA:   3'- uaCGUuCUCCGGCAGuUCaGCGCGuc -5'
6800 3' -55.9 NC_001875.2 + 40708 0.66 0.836068
Target:  5'- -cGCAAGccugcAGuaCGUCAAGgaCGCGCAGa -3'
miRNA:   3'- uaCGUUC-----UCcgGCAGUUCa-GCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 38213 0.67 0.830958
Target:  5'- cGUGCAGGAcGuGCaCGUCAGGUuugacgaggcggaagCGCGCGu -3'
miRNA:   3'- -UACGUUCU-C-CG-GCAGUUCA---------------GCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 65144 0.67 0.827513
Target:  5'- gGUGUcGGAGGCgGUCA---CGUGCAGc -3'
miRNA:   3'- -UACGuUCUCCGgCAGUucaGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 124333 0.67 0.827513
Target:  5'- uGUGCAuGcAGGCCGUUuuGUggUGCGCAa -3'
miRNA:   3'- -UACGUuC-UCCGGCAGuuCA--GCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 39169 0.67 0.809851
Target:  5'- -cGCGAGgcGGGCCGgc-GGUUGCGUGGc -3'
miRNA:   3'- uaCGUUC--UCCGGCaguUCAGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 124791 0.67 0.800761
Target:  5'- -cGCAgcGGAaccaGGCCGaCAAG-CGCGCGGc -3'
miRNA:   3'- uaCGU--UCU----CCGGCaGUUCaGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 33376 0.67 0.800761
Target:  5'- -cGCAaaagaAGcAGGCCGUCucGUCGCcCAGc -3'
miRNA:   3'- uaCGU-----UC-UCCGGCAGuuCAGCGcGUC- -5'
6800 3' -55.9 NC_001875.2 + 110086 0.68 0.762891
Target:  5'- cUGCGcguGGAGGCCGcCA---CGCGCGGc -3'
miRNA:   3'- uACGU---UCUCCGGCaGUucaGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 40472 0.68 0.753094
Target:  5'- cGUGguGGugccGGgCGUCAuGUCGCGCAa -3'
miRNA:   3'- -UACguUCu---CCgGCAGUuCAGCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 8459 0.68 0.753094
Target:  5'- aAUGCGGGu-GCUugGUCAcGUCGCGCGGa -3'
miRNA:   3'- -UACGUUCucCGG--CAGUuCAGCGCGUC- -5'
6800 3' -55.9 NC_001875.2 + 34175 0.69 0.681933
Target:  5'- uUGUucGuuGCCGUCGGcGUCGCGCAu -3'
miRNA:   3'- uACGuuCucCGGCAGUU-CAGCGCGUc -5'
6800 3' -55.9 NC_001875.2 + 11219 0.7 0.650592
Target:  5'- -gGaCGAGaAGGCCGUCAAGUUuaccgaGCGCGu -3'
miRNA:   3'- uaC-GUUC-UCCGGCAGUUCAG------CGCGUc -5'
6800 3' -55.9 NC_001875.2 + 11934 0.7 0.650592
Target:  5'- cUGCAcccAGGGGuuG--AGGUCGCGCAGc -3'
miRNA:   3'- uACGU---UCUCCggCagUUCAGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.