Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 91762 | 0.66 | 0.999958 |
Target: 5'- cGUCAGCGcc----GCGGCCUCGUCGu -3' miRNA: 3'- -UAGUUGUacuaauUGCUGGAGUAGUu -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 86656 | 0.67 | 0.999922 |
Target: 5'- -aCGugGUGAccGACGACCUCAa--- -3' miRNA: 3'- uaGUugUACUaaUUGCUGGAGUaguu -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 112116 | 0.68 | 0.999819 |
Target: 5'- uUCAACGUGuuu-ACGGCCUCGg--- -3' miRNA: 3'- uAGUUGUACuaauUGCUGGAGUaguu -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 115575 | 0.68 | 0.99961 |
Target: 5'- gGUCGccgggcaccACGUGAcgcacgcgcgUGACGGCCUCGUCGc -3' miRNA: 3'- -UAGU---------UGUACUa---------AUUGCUGGAGUAGUu -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 46295 | 0.68 | 0.999503 |
Target: 5'- cAUgAGCGUGAUUGACGugCaCAUCc- -3' miRNA: 3'- -UAgUUGUACUAAUUGCugGaGUAGuu -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 73850 | 0.68 | 0.999503 |
Target: 5'- uGUguGCGUGGUguuGCGGCC-CGUCAGg -3' miRNA: 3'- -UAguUGUACUAau-UGCUGGaGUAGUU- -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 123970 | 0.72 | 0.991509 |
Target: 5'- cAUUAGCGUGG---ACGACCUgAUCAAa -3' miRNA: 3'- -UAGUUGUACUaauUGCUGGAgUAGUU- -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 66962 | 0.73 | 0.978395 |
Target: 5'- cGUCGACGaccUUAACGugCUCAUCAAa -3' miRNA: 3'- -UAGUUGUacuAAUUGCugGAGUAGUU- -5' |
|||||||
6800 | 5' | -44.7 | NC_001875.2 | + | 65288 | 1.05 | 0.04786 |
Target: 5'- cAUCAACAUGAUUAACGACCUCAUCAAc -3' miRNA: 3'- -UAGUUGUACUAAUUGCUGGAGUAGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home