miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 3' -56.8 NC_001875.2 + 76390 0.67 0.801965
Target:  5'- cCAACAUGCUaauGUAccuGGACGCGUUCGg -3'
miRNA:   3'- -GUUGUGCGAcc-CGUu--CCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 3037 0.67 0.801061
Target:  5'- -uACACGCcguUGGGCAgcgcguaAGaGGCGCGCa-- -3'
miRNA:   3'- guUGUGCG---ACCCGU-------UC-CUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 6657 0.67 0.792854
Target:  5'- cCAGCACGCgcaaucUGGGCAAcGGC-CGCUUc -3'
miRNA:   3'- -GUUGUGCG------ACCCGUUcCUGcGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 37520 0.67 0.783595
Target:  5'- aCGACGCGCccuGCcuGGACGCGCcCAa -3'
miRNA:   3'- -GUUGUGCGaccCGuuCCUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 10447 0.67 0.774196
Target:  5'- gCAGCuuugACGC-GGcGCGGcGGCGCGCUCAg -3'
miRNA:   3'- -GUUG----UGCGaCC-CGUUcCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 35038 0.67 0.768494
Target:  5'- uGACgGCGCUGGGCAuuguGcGAacguggucccaaaacCGCGCUCu -3'
miRNA:   3'- gUUG-UGCGACCCGUu---C-CU---------------GCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 20705 0.67 0.764667
Target:  5'- gAACACG-UGGG-AAGGugGCGC-CGu -3'
miRNA:   3'- gUUGUGCgACCCgUUCCugCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 128764 0.67 0.764667
Target:  5'- -uGCACGCcgUGGGCGAccccGGCGCGC-CGc -3'
miRNA:   3'- guUGUGCG--ACCCGUUc---CUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 131205 0.67 0.755018
Target:  5'- uGAgACGCUGcaaacGC-AGGGCGCGCUUg -3'
miRNA:   3'- gUUgUGCGACc----CGuUCCUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 36666 0.67 0.755018
Target:  5'- -uGCGCGCUGaGCucGGGGCGCG-UCAc -3'
miRNA:   3'- guUGUGCGACcCGu-UCCUGCGCgAGU- -5'
6801 3' -56.8 NC_001875.2 + 108053 0.67 0.755018
Target:  5'- gCGACACGUcggcgaccUGGGCAAcG-UGCGCUCu -3'
miRNA:   3'- -GUUGUGCG--------ACCCGUUcCuGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 10865 0.67 0.755018
Target:  5'- aCGACGCGgUGGccGCGucGGugGCGCUg- -3'
miRNA:   3'- -GUUGUGCgACC--CGUu-CCugCGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 41601 0.68 0.745257
Target:  5'- gAAgGCGC-GGGCGcGGGCGCGggCAu -3'
miRNA:   3'- gUUgUGCGaCCCGUuCCUGCGCgaGU- -5'
6801 3' -56.8 NC_001875.2 + 87248 0.68 0.745257
Target:  5'- -cGCGCGCUGGGCcaaaaauuGGACgccauuacgGCGCUa- -3'
miRNA:   3'- guUGUGCGACCCGuu------CCUG---------CGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 39654 0.68 0.745257
Target:  5'- -cGCGCGCgaguuUGGGCcGGcGGCGCGCg-- -3'
miRNA:   3'- guUGUGCG-----ACCCGuUC-CUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 55722 0.68 0.745257
Target:  5'- aCGugGCGCUGGaaAAGGA-GCGCUa- -3'
miRNA:   3'- -GUugUGCGACCcgUUCCUgCGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 115685 0.68 0.715404
Target:  5'- -cACACGUUGGGCAggcauuccaggGGGuuGCGCg-- -3'
miRNA:   3'- guUGUGCGACCCGU-----------UCCugCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 72552 0.68 0.705294
Target:  5'- aCAACggGCGCUgcGGGCGcGGGCGCGggCGc -3'
miRNA:   3'- -GUUG--UGCGA--CCCGUuCCUGCGCgaGU- -5'
6801 3' -56.8 NC_001875.2 + 5921 0.69 0.695121
Target:  5'- gCAugGCGUUGGGUAGcgccgcgcagguGGGCGCGgcCUCGc -3'
miRNA:   3'- -GUugUGCGACCCGUU------------CCUGCGC--GAGU- -5'
6801 3' -56.8 NC_001875.2 + 36104 0.69 0.695121
Target:  5'- gCAGCACGC--GGCGGcGGCGCcGCUCAu -3'
miRNA:   3'- -GUUGUGCGacCCGUUcCUGCG-CGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.