miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6802 3' -60 NC_001875.2 + 78278 0.66 0.742727
Target:  5'- cGUCuuguacGGCaccaaGCCCGUUUGCGgCUCGCg -3'
miRNA:   3'- uCAGc-----CCGg----UGGGCAAACGC-GGGUGg -5'
6802 3' -60 NC_001875.2 + 32488 0.66 0.742727
Target:  5'- uGG-CGGGCgCGCCCaagUUGCGCggaCACg -3'
miRNA:   3'- -UCaGCCCG-GUGGGca-AACGCGg--GUGg -5'
6802 3' -60 NC_001875.2 + 33712 0.66 0.742727
Target:  5'- -aUCGGGuCCACCgaacagGgGUCCACCa -3'
miRNA:   3'- ucAGCCC-GGUGGgcaaa-CgCGGGUGG- -5'
6802 3' -60 NC_001875.2 + 32946 0.66 0.741776
Target:  5'- --aCGGcGCCAaucgauuCCCGaaacgGCGCCCGCg -3'
miRNA:   3'- ucaGCC-CGGU-------GGGCaaa--CGCGGGUGg -5'
6802 3' -60 NC_001875.2 + 100510 0.66 0.737006
Target:  5'- uGGUCGGGCUGCgCGUUgaacucgaacacagaUGCGUCgCAa- -3'
miRNA:   3'- -UCAGCCCGGUGgGCAA---------------ACGCGG-GUgg -5'
6802 3' -60 NC_001875.2 + 48517 0.66 0.733175
Target:  5'- uGG-CGcGCCGCCCGgcgcGCGcCCCGCg -3'
miRNA:   3'- -UCaGCcCGGUGGGCaaa-CGC-GGGUGg -5'
6802 3' -60 NC_001875.2 + 91897 0.66 0.733175
Target:  5'- gGGUCGGGCaACCgCGcgcaaaUUGCGCgCagGCCg -3'
miRNA:   3'- -UCAGCCCGgUGG-GCa-----AACGCGgG--UGG- -5'
6802 3' -60 NC_001875.2 + 54675 0.66 0.723539
Target:  5'- uGUCGGGCCAgUaaaagUUGCcGUCCGCa -3'
miRNA:   3'- uCAGCCCGGUgGgca--AACG-CGGGUGg -5'
6802 3' -60 NC_001875.2 + 111885 0.66 0.723539
Target:  5'- gAGgcgCcGGCCGgaCCGUgcGCGCCgGCCg -3'
miRNA:   3'- -UCa--GcCCGGUg-GGCAaaCGCGGgUGG- -5'
6802 3' -60 NC_001875.2 + 108059 0.66 0.723539
Target:  5'- cGUC-GGCgACCUGggcaacgUGCGCUCugCg -3'
miRNA:   3'- uCAGcCCGgUGGGCaa-----ACGCGGGugG- -5'
6802 3' -60 NC_001875.2 + 78791 0.66 0.72257
Target:  5'- cAG-CGGuaCGCCCGgcagguacaccgcUUUGCGCCCGuaguCCg -3'
miRNA:   3'- -UCaGCCcgGUGGGC-------------AAACGCGGGU----GG- -5'
6802 3' -60 NC_001875.2 + 52941 0.66 0.713827
Target:  5'- ---aGGGCUACCUGUacuucaaGCGCUaCACCa -3'
miRNA:   3'- ucagCCCGGUGGGCAaa-----CGCGG-GUGG- -5'
6802 3' -60 NC_001875.2 + 46578 0.66 0.713827
Target:  5'- -uUCGGGgCGCUCGUguccGCGCCgAgCg -3'
miRNA:   3'- ucAGCCCgGUGGGCAaa--CGCGGgUgG- -5'
6802 3' -60 NC_001875.2 + 98777 0.66 0.698153
Target:  5'- aAGUCuGGaGCCgcgcggaacgcuaucGCgCGgcgcgGCGCCCGCCg -3'
miRNA:   3'- -UCAG-CC-CGG---------------UGgGCaaa--CGCGGGUGG- -5'
6802 3' -60 NC_001875.2 + 98168 0.66 0.694213
Target:  5'- cGUCGGGCCGuuUGUUUuaccaCG-CCGCCg -3'
miRNA:   3'- uCAGCCCGGUggGCAAAc----GCgGGUGG- -5'
6802 3' -60 NC_001875.2 + 85213 0.66 0.694213
Target:  5'- --aCGGGCCGCCgCGcgguaGCGCCgCAUg -3'
miRNA:   3'- ucaGCCCGGUGG-GCaaa--CGCGG-GUGg -5'
6802 3' -60 NC_001875.2 + 33522 0.66 0.694213
Target:  5'- cAG-CGcGGCUugCCGg--GCGaaaCCACCa -3'
miRNA:   3'- -UCaGC-CCGGugGGCaaaCGCg--GGUGG- -5'
6802 3' -60 NC_001875.2 + 41274 0.66 0.692239
Target:  5'- ---aGGGCCACUCGgacgcccuucGCGCgUACCg -3'
miRNA:   3'- ucagCCCGGUGGGCaaa-------CGCGgGUGG- -5'
6802 3' -60 NC_001875.2 + 128007 0.67 0.684327
Target:  5'- aGGcUGcGGCCGCgCCGgcgUGCGCCgACg -3'
miRNA:   3'- -UCaGC-CCGGUG-GGCaa-ACGCGGgUGg -5'
6802 3' -60 NC_001875.2 + 97561 0.67 0.684327
Target:  5'- uGUCGGGCUgucacugaCUGUgcGCGCCCAg- -3'
miRNA:   3'- uCAGCCCGGug------GGCAaaCGCGGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.