miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6802 5' -53.1 NC_001875.2 + 83279 0.66 0.957506
Target:  5'- aUGGCCGGUUUGUguuGAAGCacGCacacgugGCCCa -3'
miRNA:   3'- aACUGGUCAAGCG---UUUCGc-CGa------UGGG- -5'
6802 5' -53.1 NC_001875.2 + 45729 0.66 0.953492
Target:  5'- aUGGCCAcGUccaCGCGAAgccguaaacGCGGCgccgaGCCCg -3'
miRNA:   3'- aACUGGU-CAa--GCGUUU---------CGCCGa----UGGG- -5'
6802 5' -53.1 NC_001875.2 + 18192 0.66 0.953492
Target:  5'- --uGCCGGcgggCGUAGgcguGGUGGUUGCCCa -3'
miRNA:   3'- aacUGGUCaa--GCGUU----UCGCCGAUGGG- -5'
6802 5' -53.1 NC_001875.2 + 103112 0.66 0.953492
Target:  5'- -cGAUCguGGcUCGCuuGGCGGCggcggcGCCCu -3'
miRNA:   3'- aaCUGG--UCaAGCGuuUCGCCGa-----UGGG- -5'
6802 5' -53.1 NC_001875.2 + 11042 0.66 0.950965
Target:  5'- -cGACCAGUUucaccacgcgCGCAAAcugcagcaguuuggcGUGGCgcgcGCCCu -3'
miRNA:   3'- aaCUGGUCAA----------GCGUUU---------------CGCCGa---UGGG- -5'
6802 5' -53.1 NC_001875.2 + 29205 0.66 0.94923
Target:  5'- uUUGGCCAGUugaUgGCGgccAAGCuGGCaaACCCg -3'
miRNA:   3'- -AACUGGUCA---AgCGU---UUCG-CCGa-UGGG- -5'
6802 5' -53.1 NC_001875.2 + 122142 0.66 0.94923
Target:  5'- -cGGCCGGcgCGCAcgaCGGCgaGCCCc -3'
miRNA:   3'- aaCUGGUCaaGCGUuucGCCGa-UGGG- -5'
6802 5' -53.1 NC_001875.2 + 113546 0.66 0.94923
Target:  5'- -gGGCCaauaAGcgCGCGAAGCGGCcuugugcgACCg -3'
miRNA:   3'- aaCUGG----UCaaGCGUUUCGCCGa-------UGGg -5'
6802 5' -53.1 NC_001875.2 + 23794 0.66 0.947902
Target:  5'- uUUGAUcuccugCAGUUCGCcguucAAGCGGCccgaguagaccaggUACCCc -3'
miRNA:   3'- -AACUG------GUCAAGCGu----UUCGCCG--------------AUGGG- -5'
6802 5' -53.1 NC_001875.2 + 21255 0.66 0.939947
Target:  5'- cUGGuCCAGgcgcgcgCGCGgcGCGGCUACg- -3'
miRNA:   3'- aACU-GGUCaa-----GCGUuuCGCCGAUGgg -5'
6802 5' -53.1 NC_001875.2 + 54496 0.66 0.939947
Target:  5'- cUUGACCAGUuccaggUCGCGGuaguuGgGGCcgGCCa -3'
miRNA:   3'- -AACUGGUCA------AGCGUUu----CgCCGa-UGGg -5'
6802 5' -53.1 NC_001875.2 + 65710 0.66 0.939947
Target:  5'- -cGACCAcuGUUcCGC-GGGCGGCgccGCCUc -3'
miRNA:   3'- aaCUGGU--CAA-GCGuUUCGCCGa--UGGG- -5'
6802 5' -53.1 NC_001875.2 + 119538 0.67 0.934921
Target:  5'- gUUGACCA---CGCAcacGGCGGCgUGCCg -3'
miRNA:   3'- -AACUGGUcaaGCGUu--UCGCCG-AUGGg -5'
6802 5' -53.1 NC_001875.2 + 9314 0.67 0.934921
Target:  5'- --cGCCGGa-CGCAAucGGCGaaGCUGCCCg -3'
miRNA:   3'- aacUGGUCaaGCGUU--UCGC--CGAUGGG- -5'
6802 5' -53.1 NC_001875.2 + 110461 0.67 0.929636
Target:  5'- uUUGACCAGcucuggcaacaaUUCGCuuuGGCGGCccAUCUg -3'
miRNA:   3'- -AACUGGUC------------AAGCGuu-UCGCCGa-UGGG- -5'
6802 5' -53.1 NC_001875.2 + 111484 0.67 0.929636
Target:  5'- -aGAgCugcuGgaCGCGGAGCGGCUggugaugcucuuGCCCa -3'
miRNA:   3'- aaCUgGu---CaaGCGUUUCGCCGA------------UGGG- -5'
6802 5' -53.1 NC_001875.2 + 14737 0.67 0.929636
Target:  5'- -aGGCCAugaagUCGCuucuGCGGUUugCCa -3'
miRNA:   3'- aaCUGGUca---AGCGuuu-CGCCGAugGG- -5'
6802 5' -53.1 NC_001875.2 + 49102 0.67 0.929636
Target:  5'- -cGACUAcuacGUgcgCGUAAAGCG-CUGCCCc -3'
miRNA:   3'- aaCUGGU----CAa--GCGUUUCGCcGAUGGG- -5'
6802 5' -53.1 NC_001875.2 + 103282 0.67 0.924092
Target:  5'- cUGACUAG--CGCAuaguuGCGGUcgGCCCa -3'
miRNA:   3'- aACUGGUCaaGCGUuu---CGCCGa-UGGG- -5'
6802 5' -53.1 NC_001875.2 + 33464 0.67 0.918288
Target:  5'- -cGGCCAGUggUCG-AAAGUGGCgcGCCg -3'
miRNA:   3'- aaCUGGUCA--AGCgUUUCGCCGa-UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.