miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6803 3' -54.5 NC_001875.2 + 46992 0.66 0.930001
Target:  5'- aUGAGCGCaccaCGuUgGAGGAgCUGCUGGu -3'
miRNA:   3'- -AUUCGCGc---GCcAgUUUCUgGACGACC- -5'
6803 3' -54.5 NC_001875.2 + 103004 0.66 0.924551
Target:  5'- -uGGCGUGCGG-CAAGuGCgCUGCgGGc -3'
miRNA:   3'- auUCGCGCGCCaGUUUcUG-GACGaCC- -5'
6803 3' -54.5 NC_001875.2 + 26039 0.66 0.924551
Target:  5'- gAAGaCGCuugacGUGGcCAaggAAGACCUGCUGa -3'
miRNA:   3'- aUUC-GCG-----CGCCaGU---UUCUGGACGACc -5'
6803 3' -54.5 NC_001875.2 + 42163 0.66 0.923993
Target:  5'- --cGuCGCGCGGUCAAAcguaaacGACgCgcgGUUGGg -3'
miRNA:   3'- auuC-GCGCGCCAGUUU-------CUG-Ga--CGACC- -5'
6803 3' -54.5 NC_001875.2 + 6880 0.66 0.922867
Target:  5'- -cGGCGaCGCGGUCAaacagagcuuucccGAGACCaacgUGCgcucGGc -3'
miRNA:   3'- auUCGC-GCGCCAGU--------------UUCUGG----ACGa---CC- -5'
6803 3' -54.5 NC_001875.2 + 124916 0.66 0.918849
Target:  5'- -uAGCGCGCGGUCcacgcccucGGCCgagcgcacGUUGGu -3'
miRNA:   3'- auUCGCGCGCCAGuuu------CUGGa-------CGACC- -5'
6803 3' -54.5 NC_001875.2 + 76453 0.66 0.918849
Target:  5'- gGGGCGCGCuGGcggcccacUCAAuGAgCUGCUGc -3'
miRNA:   3'- aUUCGCGCG-CC--------AGUUuCUgGACGACc -5'
6803 3' -54.5 NC_001875.2 + 90823 0.66 0.918849
Target:  5'- -cGGCcaCGCGGUUGgcGACCUGCUuuaGGu -3'
miRNA:   3'- auUCGc-GCGCCAGUuuCUGGACGA---CC- -5'
6803 3' -54.5 NC_001875.2 + 97767 0.66 0.912896
Target:  5'- cAAGCGCGUGGcggCAAcGGACgaGCUa- -3'
miRNA:   3'- aUUCGCGCGCCa--GUU-UCUGgaCGAcc -5'
6803 3' -54.5 NC_001875.2 + 72949 0.66 0.912896
Target:  5'- -uAGCGCGCGuUCGc-GGCCUGCa-- -3'
miRNA:   3'- auUCGCGCGCcAGUuuCUGGACGacc -5'
6803 3' -54.5 NC_001875.2 + 100038 0.66 0.912896
Target:  5'- --uGCGCGCuGGUUuugcuguuugugGAgcugacGGugCUGCUGGg -3'
miRNA:   3'- auuCGCGCG-CCAG------------UU------UCugGACGACC- -5'
6803 3' -54.5 NC_001875.2 + 57842 0.66 0.906691
Target:  5'- aUGAGCGCGCGaaUCAAGGc---GCUGGa -3'
miRNA:   3'- -AUUCGCGCGCc-AGUUUCuggaCGACC- -5'
6803 3' -54.5 NC_001875.2 + 86247 0.66 0.906691
Target:  5'- --uGCGCGCcggaGUC--GGGCCcGCUGGa -3'
miRNA:   3'- auuCGCGCGc---CAGuuUCUGGaCGACC- -5'
6803 3' -54.5 NC_001875.2 + 50553 0.66 0.900239
Target:  5'- -cGGCGCGCGuGUCuuuugcGGGGCauucguuggUGCUGGa -3'
miRNA:   3'- auUCGCGCGC-CAGu-----UUCUGg--------ACGACC- -5'
6803 3' -54.5 NC_001875.2 + 100889 0.66 0.900239
Target:  5'- --cGCGCGUGGgcgcCAuggcGAGACCUGUgcGGc -3'
miRNA:   3'- auuCGCGCGCCa---GU----UUCUGGACGa-CC- -5'
6803 3' -54.5 NC_001875.2 + 131513 0.67 0.893541
Target:  5'- -cGGCGCGCGGUgCA---GCg-GCUGGa -3'
miRNA:   3'- auUCGCGCGCCA-GUuucUGgaCGACC- -5'
6803 3' -54.5 NC_001875.2 + 89268 0.67 0.893541
Target:  5'- --cGCGCGCGuG-CGccGACCUggcgcgGCUGGg -3'
miRNA:   3'- auuCGCGCGC-CaGUuuCUGGA------CGACC- -5'
6803 3' -54.5 NC_001875.2 + 65800 0.67 0.872015
Target:  5'- -cGGCGCGCGGU-----GCCUGCgcGGc -3'
miRNA:   3'- auUCGCGCGCCAguuucUGGACGa-CC- -5'
6803 3' -54.5 NC_001875.2 + 125415 0.67 0.872015
Target:  5'- -cGGCGCGCaaauGGUgAAgauGGGCUUGCUGu -3'
miRNA:   3'- auUCGCGCG----CCAgUU---UCUGGACGACc -5'
6803 3' -54.5 NC_001875.2 + 126488 0.67 0.864378
Target:  5'- -cAGCGgGUGGUCAAuGACCaGCa-- -3'
miRNA:   3'- auUCGCgCGCCAGUUuCUGGaCGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.