miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6803 5' -62.4 NC_001875.2 + 31127 0.66 0.621794
Target:  5'- gCGCCGCagcaAUGUGCaUGCUUaacgcgCCGCGcGCg -3'
miRNA:   3'- -GCGGUGg---UGCACGaACGGG------GGCGC-CG- -5'
6803 5' -62.4 NC_001875.2 + 86929 0.66 0.621794
Target:  5'- gCGCCGCCuagaGUGCgagggcgaGCCgCCagcguccaaGCGGCg -3'
miRNA:   3'- -GCGGUGGug--CACGaa------CGG-GGg--------CGCCG- -5'
6803 5' -62.4 NC_001875.2 + 66751 0.66 0.621794
Target:  5'- gGCCGCCucguugagcGCGUcCUUGCCCagCGUguuGGCg -3'
miRNA:   3'- gCGGUGG---------UGCAcGAACGGGg-GCG---CCG- -5'
6803 5' -62.4 NC_001875.2 + 85704 0.66 0.621794
Target:  5'- uGCgCGCCGCGaucgacUGgUUGCCCagCGUGGUc -3'
miRNA:   3'- gCG-GUGGUGC------ACgAACGGGg-GCGCCG- -5'
6803 5' -62.4 NC_001875.2 + 41439 0.66 0.621794
Target:  5'- gGCCGCUGCGcGCgcacagGCgCCgguUGCGGCg -3'
miRNA:   3'- gCGGUGGUGCaCGaa----CGgGG---GCGCCG- -5'
6803 5' -62.4 NC_001875.2 + 1845 0.66 0.620807
Target:  5'- cCGCCaaugguagauuugGCCACGaGCaUGCCgCCGCcGCc -3'
miRNA:   3'- -GCGG-------------UGGUGCaCGaACGGgGGCGcCG- -5'
6803 5' -62.4 NC_001875.2 + 1820 0.66 0.611924
Target:  5'- uGUgACCACGaGCaUGCCgCCGCcGCc -3'
miRNA:   3'- gCGgUGGUGCaCGaACGGgGGCGcCG- -5'
6803 5' -62.4 NC_001875.2 + 7040 0.66 0.611924
Target:  5'- gCGCCGCCACGcUGg-UGCaagacauaaUCCGCGcGCu -3'
miRNA:   3'- -GCGGUGGUGC-ACgaACGg--------GGGCGC-CG- -5'
6803 5' -62.4 NC_001875.2 + 42679 0.66 0.611924
Target:  5'- gCGCCA--GCGUGCacGaaaCCgCGCGGCg -3'
miRNA:   3'- -GCGGUggUGCACGaaCg--GGgGCGCCG- -5'
6803 5' -62.4 NC_001875.2 + 101031 0.66 0.611924
Target:  5'- uGCCGCCGCGcaaaCUUGCUuugaaCCGCaGGUg -3'
miRNA:   3'- gCGGUGGUGCac--GAACGGg----GGCG-CCG- -5'
6803 5' -62.4 NC_001875.2 + 12433 0.66 0.611924
Target:  5'- gGCCGuuGCGUGCg---CgCCGCGGUg -3'
miRNA:   3'- gCGGUggUGCACGaacgGgGGCGCCG- -5'
6803 5' -62.4 NC_001875.2 + 1772 0.66 0.611924
Target:  5'- uGUgACCACGaGCaUGCCgCCGCcGCc -3'
miRNA:   3'- gCGgUGGUGCaCGaACGGgGGCGcCG- -5'
6803 5' -62.4 NC_001875.2 + 100621 0.66 0.610938
Target:  5'- cCGCUguuuGCCucguggaugagcaGCGUGCgcgucaGCCCCCaccaauuccaGCGGCg -3'
miRNA:   3'- -GCGG----UGG-------------UGCACGaa----CGGGGG----------CGCCG- -5'
6803 5' -62.4 NC_001875.2 + 29214 0.66 0.609952
Target:  5'- gGCCACUccgcaaAgGUGCgcaaacgcgcgGCUUCCGUGGCa -3'
miRNA:   3'- gCGGUGG------UgCACGaa---------CGGGGGCGCCG- -5'
6803 5' -62.4 NC_001875.2 + 97923 0.66 0.602069
Target:  5'- gGCCACCucaACGUGUcgcUGCaccaaaccgaCCCCGaGGCg -3'
miRNA:   3'- gCGGUGG---UGCACGa--ACG----------GGGGCgCCG- -5'
6803 5' -62.4 NC_001875.2 + 53993 0.66 0.602069
Target:  5'- uGCCGCagCugGUcGCgcacgGCCUUgGCGGCg -3'
miRNA:   3'- gCGGUG--GugCA-CGaa---CGGGGgCGCCG- -5'
6803 5' -62.4 NC_001875.2 + 18554 0.66 0.602069
Target:  5'- uCGCCACCGacauuggGUUcgacaUGCUCCUGaCGGCg -3'
miRNA:   3'- -GCGGUGGUgca----CGA-----ACGGGGGC-GCCG- -5'
6803 5' -62.4 NC_001875.2 + 58151 0.66 0.602069
Target:  5'- aGCCGCCGCa-GCa-GCCgCCGCaGCa -3'
miRNA:   3'- gCGGUGGUGcaCGaaCGGgGGCGcCG- -5'
6803 5' -62.4 NC_001875.2 + 90632 0.66 0.602069
Target:  5'- uGCgCGCCACaaauUGCUcaagcugGUCCCCGuCGGUg -3'
miRNA:   3'- gCG-GUGGUGc---ACGAa------CGGGGGC-GCCG- -5'
6803 5' -62.4 NC_001875.2 + 1197 0.66 0.602069
Target:  5'- aCGCUgaACCGCaUGCgccUGCUCCUGauCGGCg -3'
miRNA:   3'- -GCGG--UGGUGcACGa--ACGGGGGC--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.