miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 70559 0.66 0.960921
Target:  5'- aACGCAaucggacgauggcguUCGUUauaacaAGCAUGUGCACGUa- -3'
miRNA:   3'- -UGCGU---------------AGCGAg-----UUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 126537 0.66 0.95945
Target:  5'- cGCGCAauggaguggUCGUcgGGCGCGgGCACGUc- -3'
miRNA:   3'- -UGCGU---------AGCGagUUGUGCgCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 24208 0.66 0.95945
Target:  5'- cUGUggCGCUgAGCGCGCaGUauGCGUUGg -3'
miRNA:   3'- uGCGuaGCGAgUUGUGCG-CG--UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 83012 0.66 0.95945
Target:  5'- -gGCGUCaGCUgGAC-CGCGCGCa--- -3'
miRNA:   3'- ugCGUAG-CGAgUUGuGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 9901 0.66 0.95945
Target:  5'- uGCGCucaCGUuacucgCGACugGCGCGCGg-- -3'
miRNA:   3'- -UGCGua-GCGa-----GUUGugCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 129970 0.66 0.95945
Target:  5'- gACGCAcUGCUaaaaaUAGCACGCGCcuuucaaaaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 18497 0.66 0.95945
Target:  5'- gACGCAgccgCGCcCGACcCGCcGCACGa-- -3'
miRNA:   3'- -UGCGUa---GCGaGUUGuGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 23271 0.66 0.95945
Target:  5'- aGCGCAgCGC-CAGCAccgcCGCGC-CGUa- -3'
miRNA:   3'- -UGCGUaGCGaGUUGU----GCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 112839 0.66 0.95945
Target:  5'- aGCGCGUUGCggccuGCGCGCACu--- -3'
miRNA:   3'- -UGCGUAGCGaguugUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 90415 0.66 0.957173
Target:  5'- cGCGCAgcggccccuguuuaCGCUguaGACGCGCGCGCa--- -3'
miRNA:   3'- -UGCGUa-------------GCGAg--UUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 97618 0.66 0.955607
Target:  5'- gACGCuUUGCaaAACACGUGCGCa--- -3'
miRNA:   3'- -UGCGuAGCGagUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 61893 0.66 0.955607
Target:  5'- uCGcCGUgGCcCGACACGCGC-CGUg- -3'
miRNA:   3'- uGC-GUAgCGaGUUGUGCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 37190 0.66 0.955607
Target:  5'- -gGC-UCGCUgGACaaaaACGUGCGCGUa- -3'
miRNA:   3'- ugCGuAGCGAgUUG----UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 57030 0.66 0.955607
Target:  5'- aACGCGcCGCUgGGCGCGuCGUACu--- -3'
miRNA:   3'- -UGCGUaGCGAgUUGUGC-GCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 117099 0.66 0.955607
Target:  5'- aACGCGUCGCaaaccCAACAgG-GCGCGg-- -3'
miRNA:   3'- -UGCGUAGCGa----GUUGUgCgCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 78235 0.66 0.955607
Target:  5'- gGCGCGUCaGaUUguGCugGUGCACGggGu -3'
miRNA:   3'- -UGCGUAG-C-GAguUGugCGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 122133 0.66 0.955607
Target:  5'- gGCGCggCGCggccgGCGCGCACGa-- -3'
miRNA:   3'- -UGCGuaGCGaguugUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 109936 0.66 0.955607
Target:  5'- cACGCGcCGCUCAcCGCGgagcaGCGCGa-- -3'
miRNA:   3'- -UGCGUaGCGAGUuGUGCg----CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 79952 0.66 0.955607
Target:  5'- cACGC--CGUUCAgGCAC-UGCACGUUGg -3'
miRNA:   3'- -UGCGuaGCGAGU-UGUGcGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 43819 0.66 0.955607
Target:  5'- uGCGCGggCGUUU---GCGCGgGCGUUGg -3'
miRNA:   3'- -UGCGUa-GCGAGuugUGCGCgUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.