miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 53824 0.66 0.948956
Target:  5'- gGCGCAccgaCGCUC-ACAacucgucaauggucuCGCGCACGcUGg -3'
miRNA:   3'- -UGCGUa---GCGAGuUGU---------------GCGCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 45446 0.66 0.942621
Target:  5'- uGCGCGUcgaacucggCGCUCGGCGCccgcagcCGCGCGUc- -3'
miRNA:   3'- -UGCGUA---------GCGAGUUGUGc------GCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 9901 0.66 0.95945
Target:  5'- uGCGCucaCGUuacucgCGACugGCGCGCGg-- -3'
miRNA:   3'- -UGCGua-GCGa-----GUUGugCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 61893 0.66 0.955607
Target:  5'- uCGcCGUgGCcCGACACGCGC-CGUg- -3'
miRNA:   3'- uGC-GUAgCGaGUUGUGCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 129970 0.66 0.95945
Target:  5'- gACGCAcUGCUaaaaaUAGCACGCGCcuuucaaaaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 109936 0.66 0.955607
Target:  5'- cACGCGcCGCUCAcCGCGgagcaGCGCGa-- -3'
miRNA:   3'- -UGCGUaGCGAGUuGUGCg----CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 71993 0.66 0.947196
Target:  5'- cACGCGUCGCUguAguCGC-CGCGg-- -3'
miRNA:   3'- -UGCGUAGCGAguUguGCGcGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 78235 0.66 0.955607
Target:  5'- gGCGCGUCaGaUUguGCugGUGCACGggGu -3'
miRNA:   3'- -UGCGUAG-C-GAguUGugCGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 97881 0.66 0.951523
Target:  5'- cUGCG-CGC-C-GCACGgGCACGUUGc -3'
miRNA:   3'- uGCGUaGCGaGuUGUGCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 45526 0.66 0.94764
Target:  5'- cACGCAguugCGCcgauuauuaagggcgCAGCACGUGUACGa-- -3'
miRNA:   3'- -UGCGUa---GCGa--------------GUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 58391 0.66 0.942621
Target:  5'- cGCGCGUCG-UCAACA-GCGCAUuuUUGa -3'
miRNA:   3'- -UGCGUAGCgAGUUGUgCGCGUGc-AAC- -5'
6804 3' -53.4 NC_001875.2 + 52736 0.66 0.947196
Target:  5'- gGCGgAUCGC-CAGCAUuuGCGCGCu--- -3'
miRNA:   3'- -UGCgUAGCGaGUUGUG--CGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 116938 0.66 0.951523
Target:  5'- gACGUAgaGCaUCcACACGCGCGUGUUGu -3'
miRNA:   3'- -UGCGUagCG-AGuUGUGCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 121955 0.66 0.953186
Target:  5'- cGCGCGgcagCGUUgCAGCguauucaaaaagcugGCGgGCACGUUGc -3'
miRNA:   3'- -UGCGUa---GCGA-GUUG---------------UGCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 122133 0.66 0.955607
Target:  5'- gGCGCggCGCggccgGCGCGCACGa-- -3'
miRNA:   3'- -UGCGuaGCGaguugUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 83012 0.66 0.95945
Target:  5'- -gGCGUCaGCUgGAC-CGCGCGCa--- -3'
miRNA:   3'- ugCGUAG-CGAgUUGuGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 18497 0.66 0.95945
Target:  5'- gACGCAgccgCGCcCGACcCGCcGCACGa-- -3'
miRNA:   3'- -UGCGUa---GCGaGUUGuGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 24208 0.66 0.95945
Target:  5'- cUGUggCGCUgAGCGCGCaGUauGCGUUGg -3'
miRNA:   3'- uGCGuaGCGAgUUGUGCG-CG--UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 110886 0.66 0.947196
Target:  5'- gACGCGUuugCGCUgGACGgccCGCGgGCGUUu -3'
miRNA:   3'- -UGCGUA---GCGAgUUGU---GCGCgUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 126537 0.66 0.95945
Target:  5'- cGCGCAauggaguggUCGUcgGGCGCGgGCACGUc- -3'
miRNA:   3'- -UGCGU---------AGCGagUUGUGCgCGUGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.