miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 23271 0.66 0.95945
Target:  5'- aGCGCAgCGC-CAGCAccgcCGCGC-CGUa- -3'
miRNA:   3'- -UGCGUaGCGaGUUGU----GCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 78355 0.66 0.951523
Target:  5'- cCGCAUgGC-CGACAuCGCGCAgGa-- -3'
miRNA:   3'- uGCGUAgCGaGUUGU-GCGCGUgCaac -5'
6804 3' -53.4 NC_001875.2 + 37190 0.66 0.955607
Target:  5'- -gGC-UCGCUgGACaaaaACGUGCGCGUa- -3'
miRNA:   3'- ugCGuAGCGAgUUG----UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 68849 0.67 0.921803
Target:  5'- gACGgGUCGC---ACGCGUGCGCGa-- -3'
miRNA:   3'- -UGCgUAGCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 100823 0.67 0.921803
Target:  5'- cGCGCGauucgaUUGCcaagUCGGcCGCGCGCGCGUa- -3'
miRNA:   3'- -UGCGU------AGCG----AGUU-GUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 59114 0.67 0.921803
Target:  5'- -gGCGUCGCUggcCGACGCGCaaGCGCa--- -3'
miRNA:   3'- ugCGUAGCGA---GUUGUGCG--CGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 104517 0.67 0.921803
Target:  5'- aACGcCGUCcgGCUUuuGCACGCGCAUGg-- -3'
miRNA:   3'- -UGC-GUAG--CGAGu-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 73134 0.67 0.92123
Target:  5'- uGCGCGUCGCgcuguACACGCucuccacaacgcuGUACGUg- -3'
miRNA:   3'- -UGCGUAGCGagu--UGUGCG-------------CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 122241 0.67 0.915965
Target:  5'- aACGCGUCGUU--GCACGCGCcCa--- -3'
miRNA:   3'- -UGCGUAGCGAguUGUGCGCGuGcaac -5'
6804 3' -53.4 NC_001875.2 + 94608 0.67 0.939756
Target:  5'- gGCGguUCGCUgagcugcagcggCGGCacaacgugauacauuACGCGCACGUUu -3'
miRNA:   3'- -UGCguAGCGA------------GUUG---------------UGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 96841 0.67 0.909875
Target:  5'- cGCGCcUUGUUugaCGGCGCGCGCACa--- -3'
miRNA:   3'- -UGCGuAGCGA---GUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 58075 0.67 0.921803
Target:  5'- cGCGCugucggCGgUCuGGCGCguGCGCACGUUGu -3'
miRNA:   3'- -UGCGua----GCgAG-UUGUG--CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 20729 0.67 0.909875
Target:  5'- gACGCAUUGCU--GC-CGUGCACGc-- -3'
miRNA:   3'- -UGCGUAGCGAguUGuGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 19867 0.67 0.921803
Target:  5'- cCGCGUCGCg--GCGCGgGCGcCGUUu -3'
miRNA:   3'- uGCGUAGCGaguUGUGCgCGU-GCAAc -5'
6804 3' -53.4 NC_001875.2 + 64894 0.67 0.915965
Target:  5'- uCGuCGaCGCUCAGCuguCGCGCcuCGUUGa -3'
miRNA:   3'- uGC-GUaGCGAGUUGu--GCGCGu-GCAAC- -5'
6804 3' -53.4 NC_001875.2 + 86400 0.67 0.924067
Target:  5'- aGCGCcgaGUUCGACGCGCaaaacaaccugcgcgGCACGUUu -3'
miRNA:   3'- -UGCGuagCGAGUUGUGCG---------------CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 52829 0.67 0.921803
Target:  5'- aGCGCG-CGaCUCgGACACGCuguccaGCugGUUGa -3'
miRNA:   3'- -UGCGUaGC-GAG-UUGUGCG------CGugCAAC- -5'
6804 3' -53.4 NC_001875.2 + 119892 0.67 0.909875
Target:  5'- aACGCGcCGC-CGGuCGCGCGCACa--- -3'
miRNA:   3'- -UGCGUaGCGaGUU-GUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 113565 0.67 0.937795
Target:  5'- gGCGCgGUCGCgcaCGGCGCGCcauugggccaGCACGg-- -3'
miRNA:   3'- -UGCG-UAGCGa--GUUGUGCG----------CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 122202 0.67 0.915965
Target:  5'- uCGCGaaacaCGCaCGGCGCGCGCACGc-- -3'
miRNA:   3'- uGCGUa----GCGaGUUGUGCGCGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.