miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 29291 0.67 0.927387
Target:  5'- gGCGCgGUCGUgUGGCGuguCGUGCGCGUUGu -3'
miRNA:   3'- -UGCG-UAGCGaGUUGU---GCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 114234 0.67 0.927387
Target:  5'- uCGuCGUCGCUgGACGCGgGCcgcaGCGUg- -3'
miRNA:   3'- uGC-GUAGCGAgUUGUGCgCG----UGCAac -5'
6804 3' -53.4 NC_001875.2 + 37152 0.67 0.927387
Target:  5'- uGCGCAUCGCcggguucCAGCACccgugcCGCGCGcUGg -3'
miRNA:   3'- -UGCGUAGCGa------GUUGUGc-----GCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 68849 0.67 0.921803
Target:  5'- gACGgGUCGC---ACGCGUGCGCGa-- -3'
miRNA:   3'- -UGCgUAGCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 103321 0.67 0.921803
Target:  5'- gGCGUGcCGggCGACGCGUGCGCGa-- -3'
miRNA:   3'- -UGCGUaGCgaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 122202 0.67 0.915965
Target:  5'- uCGCGaaacaCGCaCGGCGCGCGCACGc-- -3'
miRNA:   3'- uGCGUa----GCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 122241 0.67 0.915965
Target:  5'- aACGCGUCGUU--GCACGCGCcCa--- -3'
miRNA:   3'- -UGCGUAGCGAguUGUGCGCGuGcaac -5'
6804 3' -53.4 NC_001875.2 + 44159 0.67 0.937795
Target:  5'- cACGuCGUCGCUCuccucgauuucGCACGCGCugaccgucggcGCGUg- -3'
miRNA:   3'- -UGC-GUAGCGAGu----------UGUGCGCG-----------UGCAac -5'
6804 3' -53.4 NC_001875.2 + 57714 0.67 0.937795
Target:  5'- aACGCGUCGUcgcgCGACaccgcaaagucGCGCGgCGCGUa- -3'
miRNA:   3'- -UGCGUAGCGa---GUUG-----------UGCGC-GUGCAac -5'
6804 3' -53.4 NC_001875.2 + 90023 0.67 0.932718
Target:  5'- cGCGCAacUgGCcgCGGCGCcgGCGCGCGUg- -3'
miRNA:   3'- -UGCGU--AgCGa-GUUGUG--CGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 24003 0.67 0.932718
Target:  5'- cGCGCGUCGCaaGGCGCaccGgGCGCGg-- -3'
miRNA:   3'- -UGCGUAGCGagUUGUG---CgCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 91126 0.67 0.937795
Target:  5'- -gGCGUUGUagUUgauGACGCGCGCGCGgcGg -3'
miRNA:   3'- ugCGUAGCG--AG---UUGUGCGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 34284 0.67 0.937795
Target:  5'- gGCGuCAaCGCUUuguGGCAcuCGUGCGCGUUGc -3'
miRNA:   3'- -UGC-GUaGCGAG---UUGU--GCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 93561 0.67 0.932718
Target:  5'- cCGCGUCGUcguACGCGCGCuGCGa-- -3'
miRNA:   3'- uGCGUAGCGaguUGUGCGCG-UGCaac -5'
6804 3' -53.4 NC_001875.2 + 10494 0.67 0.932718
Target:  5'- cCGgGUCGCaaAACAUGCGCACu--- -3'
miRNA:   3'- uGCgUAGCGagUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 69595 0.67 0.932718
Target:  5'- uACGUGUggCGCUUuACGCgGCGCGCGUc- -3'
miRNA:   3'- -UGCGUA--GCGAGuUGUG-CGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 93630 0.67 0.927387
Target:  5'- aGCGCAUCGaggcCAACuuuacccacuACGaGCACGUUGa -3'
miRNA:   3'- -UGCGUAGCga--GUUG----------UGCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 94608 0.67 0.939756
Target:  5'- gGCGguUCGCUgagcugcagcggCGGCacaacgugauacauuACGCGCACGUUu -3'
miRNA:   3'- -UGCguAGCGA------------GUUG---------------UGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 113565 0.67 0.937795
Target:  5'- gGCGCgGUCGCgcaCGGCGCGCcauugggccaGCACGg-- -3'
miRNA:   3'- -UGCG-UAGCGa--GUUGUGCG----------CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 110811 0.67 0.937795
Target:  5'- aACGCcgCGCagGugGaCGCGCugGUg- -3'
miRNA:   3'- -UGCGuaGCGagUugU-GCGCGugCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.