miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 58075 0.67 0.921803
Target:  5'- cGCGCugucggCGgUCuGGCGCguGCGCACGUUGu -3'
miRNA:   3'- -UGCGua----GCgAG-UUGUG--CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 100823 0.67 0.921803
Target:  5'- cGCGCGauucgaUUGCcaagUCGGcCGCGCGCGCGUa- -3'
miRNA:   3'- -UGCGU------AGCG----AGUU-GUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 86400 0.67 0.924067
Target:  5'- aGCGCcgaGUUCGACGCGCaaaacaaccugcgcgGCACGUUu -3'
miRNA:   3'- -UGCGuagCGAGUUGUGCG---------------CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 34284 0.67 0.937795
Target:  5'- gGCGuCAaCGCUUuguGGCAcuCGUGCGCGUUGc -3'
miRNA:   3'- -UGC-GUaGCGAG---UUGU--GCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 24003 0.67 0.932718
Target:  5'- cGCGCGUCGCaaGGCGCaccGgGCGCGg-- -3'
miRNA:   3'- -UGCGUAGCGagUUGUG---CgCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 93561 0.67 0.932718
Target:  5'- cCGCGUCGUcguACGCGCGCuGCGa-- -3'
miRNA:   3'- uGCGUAGCGaguUGUGCGCG-UGCaac -5'
6804 3' -53.4 NC_001875.2 + 90023 0.67 0.932718
Target:  5'- cGCGCAacUgGCcgCGGCGCcgGCGCGCGUg- -3'
miRNA:   3'- -UGCGU--AgCGa-GUUGUG--CGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 10494 0.67 0.932718
Target:  5'- cCGgGUCGCaaAACAUGCGCACu--- -3'
miRNA:   3'- uGCgUAGCGagUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 69595 0.67 0.932718
Target:  5'- uACGUGUggCGCUUuACGCgGCGCGCGUc- -3'
miRNA:   3'- -UGCGUA--GCGAGuUGUG-CGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 65361 0.67 0.932718
Target:  5'- uACGU---GCUCAACgaaaaaaaccGCGCGCGCGUg- -3'
miRNA:   3'- -UGCGuagCGAGUUG----------UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 85247 0.67 0.937795
Target:  5'- aGCGCGgguuccgCGCUCGGCGCG-GaCACGa-- -3'
miRNA:   3'- -UGCGUa------GCGAGUUGUGCgC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 21897 0.67 0.932197
Target:  5'- cACGUcgCGCUgcuccgcggugagCGGCGCGUGCAUGg-- -3'
miRNA:   3'- -UGCGuaGCGA-------------GUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 111191 0.67 0.927387
Target:  5'- gGCGCGcUGggCGGCGCGCGC-CGUUu -3'
miRNA:   3'- -UGCGUaGCgaGUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 3016 0.67 0.927387
Target:  5'- uGCGCGUCGCcgugCAaguuguACACGCcguugggcaGCGCGUa- -3'
miRNA:   3'- -UGCGUAGCGa---GU------UGUGCG---------CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 3343 0.67 0.927387
Target:  5'- gGCGCcUCGUgucCGGuCACGCGCAUGa-- -3'
miRNA:   3'- -UGCGuAGCGa--GUU-GUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 94798 0.67 0.927387
Target:  5'- cCGCG-CGCgugCAGCGcCGUGCACGg-- -3'
miRNA:   3'- uGCGUaGCGa--GUUGU-GCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 33399 0.68 0.896273
Target:  5'- uGCGCGguagCGCUCGuggcugaGCugGCGCuCGUc- -3'
miRNA:   3'- -UGCGUa---GCGAGU-------UGugCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 111530 0.68 0.896946
Target:  5'- uGCGUAUgGUcaAACACGCGCACa--- -3'
miRNA:   3'- -UGCGUAgCGagUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 12659 0.68 0.896946
Target:  5'- cAUGCuGUUGUU-GACGCGCGCcGCGUUGg -3'
miRNA:   3'- -UGCG-UAGCGAgUUGUGCGCG-UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 36575 0.68 0.896946
Target:  5'- gACGCA-CGCggcgagcuuguaUCGGCGCGUGUACGg-- -3'
miRNA:   3'- -UGCGUaGCG------------AGUUGUGCGCGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.