miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 32889 0.73 0.670462
Target:  5'- aGCGCugcaaacgGCUgAACACGCGCGCGUc- -3'
miRNA:   3'- -UGCGuag-----CGAgUUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 66046 0.72 0.701721
Target:  5'- cGCGCAggcaccgcgCGC-CGACGcCGCGCGCGUg- -3'
miRNA:   3'- -UGCGUa--------GCGaGUUGU-GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 130294 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130228 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130162 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130036 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 5588 0.72 0.701721
Target:  5'- uGCGUGUCGCgucgCAACagauGCGUGCACGg-- -3'
miRNA:   3'- -UGCGUAGCGa---GUUG----UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 74301 0.72 0.712029
Target:  5'- aGCGCAUCGCcuaCGGCGCGCaggcgccggacaGCACGg-- -3'
miRNA:   3'- -UGCGUAGCGa--GUUGUGCG------------CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 4583 0.72 0.722265
Target:  5'- cCGCAU-GCcCGACAUGCGCACGa-- -3'
miRNA:   3'- uGCGUAgCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 113810 0.72 0.680928
Target:  5'- uCGCAUUGCacgUCAAUGuCGCGCGCGUa- -3'
miRNA:   3'- uGCGUAGCG---AGUUGU-GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 77482 0.72 0.712029
Target:  5'- uGCGC-UCGCcCAACGCGCcggGCGCGUc- -3'
miRNA:   3'- -UGCGuAGCGaGUUGUGCG---CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 8830 0.71 0.772012
Target:  5'- gGCGCGcccaacaccaacUCaUUCAGCugGCGCACGUg- -3'
miRNA:   3'- -UGCGU------------AGcGAGUUGugCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 573 0.71 0.732419
Target:  5'- gUGCAagUCGUUCAACGCGuCGCACa--- -3'
miRNA:   3'- uGCGU--AGCGAGUUGUGC-GCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 37353 0.71 0.75244
Target:  5'- cGCGCGgccgcgCGCUCGugcgaACGCGCGCGCc--- -3'
miRNA:   3'- -UGCGUa-----GCGAGU-----UGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 125197 0.71 0.762288
Target:  5'- uGCGCGU-GCUgGGCACGUuuaGCACGUUu -3'
miRNA:   3'- -UGCGUAgCGAgUUGUGCG---CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 54932 0.71 0.762288
Target:  5'- uCGuCGUCGCUgGGCgccgccccuuuGCGCGCGCGUUu -3'
miRNA:   3'- uGC-GUAGCGAgUUG-----------UGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 42592 0.71 0.762288
Target:  5'- cGCGCGUCaGCUCGGCGCuGgGCACc--- -3'
miRNA:   3'- -UGCGUAG-CGAGUUGUG-CgCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 53382 0.71 0.772012
Target:  5'- gGCGCAgcgagCGCUUuuGCGgGCGCACGa-- -3'
miRNA:   3'- -UGCGUa----GCGAGu-UGUgCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 66923 0.71 0.772012
Target:  5'- gGCGCAcaaugucgucgUCGCUCuGCGCGCGCuuGa-- -3'
miRNA:   3'- -UGCGU-----------AGCGAGuUGUGCGCGugCaac -5'
6804 3' -53.4 NC_001875.2 + 52525 0.71 0.772012
Target:  5'- aGCGCcgCGCUCAucgaaaGCACGCGC-Ca--- -3'
miRNA:   3'- -UGCGuaGCGAGU------UGUGCGCGuGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.