Results 41 - 60 of 231 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 8830 | 0.71 | 0.772012 |
Target: 5'- gGCGCGcccaacaccaacUCaUUCAGCugGCGCACGUg- -3' miRNA: 3'- -UGCGU------------AGcGAGUUGugCGCGUGCAac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 53382 | 0.71 | 0.772012 |
Target: 5'- gGCGCAgcgagCGCUUuuGCGgGCGCACGa-- -3' miRNA: 3'- -UGCGUa----GCGAGu-UGUgCGCGUGCaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 42592 | 0.71 | 0.762288 |
Target: 5'- cGCGCGUCaGCUCGGCGCuGgGCACc--- -3' miRNA: 3'- -UGCGUAG-CGAGUUGUG-CgCGUGcaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 54932 | 0.71 | 0.762288 |
Target: 5'- uCGuCGUCGCUgGGCgccgccccuuuGCGCGCGCGUUu -3' miRNA: 3'- uGC-GUAGCGAgUUG-----------UGCGCGUGCAAc -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 37353 | 0.71 | 0.75244 |
Target: 5'- cGCGCGgccgcgCGCUCGugcgaACGCGCGCGCc--- -3' miRNA: 3'- -UGCGUa-----GCGAGU-----UGUGCGCGUGcaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 54974 | 0.71 | 0.75244 |
Target: 5'- gACGCGUCGCUCGcGCugGgCGCcuuuCGUUu -3' miRNA: 3'- -UGCGUAGCGAGU-UGugC-GCGu---GCAAc -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 81342 | 0.71 | 0.742481 |
Target: 5'- cGCGCGgcgCGCUgGugcCGCGCGCACGc-- -3' miRNA: 3'- -UGCGUa--GCGAgUu--GUGCGCGUGCaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 124919 | 0.71 | 0.732419 |
Target: 5'- cGCGCGguccaCGCccUCGGCcgaGCGCACGUUGg -3' miRNA: 3'- -UGCGUa----GCG--AGUUGug-CGCGUGCAAC- -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 573 | 0.71 | 0.732419 |
Target: 5'- gUGCAagUCGUUCAACGCGuCGCACa--- -3' miRNA: 3'- uGCGU--AGCGAGUUGUGC-GCGUGcaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 36476 | 0.71 | 0.75244 |
Target: 5'- gACGCcguuuucCGC-CGACGCGUGCACGUg- -3' miRNA: 3'- -UGCGua-----GCGaGUUGUGCGCGUGCAac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 125969 | 0.71 | 0.75244 |
Target: 5'- gGCGCAUCgGCgagggcaAACGCGUGCugGUg- -3' miRNA: 3'- -UGCGUAG-CGag-----UUGUGCGCGugCAac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 18280 | 0.71 | 0.762288 |
Target: 5'- cGCGCcgUGCgCGAC-CGCGC-CGUUGa -3' miRNA: 3'- -UGCGuaGCGaGUUGuGCGCGuGCAAC- -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 98935 | 0.71 | 0.772012 |
Target: 5'- uGCGCGU-GCgCGACGCGCGCGUGUUc -3' miRNA: 3'- -UGCGUAgCGaGUUGUGCGCGUGCAAc -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 11169 | 0.7 | 0.781604 |
Target: 5'- cGCGCG-CGCaUCGACAaguUGCGCGcCGUUGu -3' miRNA: 3'- -UGCGUaGCG-AGUUGU---GCGCGU-GCAAC- -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 128741 | 0.7 | 0.818454 |
Target: 5'- cGCGCGagccgCGCccCGGCGCGUGCACGccgUGg -3' miRNA: 3'- -UGCGUa----GCGa-GUUGUGCGCGUGCa--AC- -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 42475 | 0.7 | 0.82724 |
Target: 5'- cACGCAg----CAACACGCGCACGc-- -3' miRNA: 3'- -UGCGUagcgaGUUGUGCGCGUGCaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 42052 | 0.7 | 0.82724 |
Target: 5'- cGCGCugCGUUCGcGCACGUGCACGa-- -3' miRNA: 3'- -UGCGuaGCGAGU-UGUGCGCGUGCaac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 82720 | 0.7 | 0.830702 |
Target: 5'- cGCGCAggggcacggggcagCGCUU--UACGCGCACGUa- -3' miRNA: 3'- -UGCGUa-------------GCGAGuuGUGCGCGUGCAac -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 124984 | 0.7 | 0.809488 |
Target: 5'- cGCGCGUcCGCUUuacgugcaaguuGGCGuCGgGCACGUUGu -3' miRNA: 3'- -UGCGUA-GCGAG------------UUGU-GCgCGUGCAAC- -5' |
|||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 26671 | 0.7 | 0.781604 |
Target: 5'- gAUGCAcaugaugacuUCGCcCAACACGCGCcgcGCGUUc -3' miRNA: 3'- -UGCGU----------AGCGaGUUGUGCGCG---UGCAAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home