miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 42475 0.7 0.82724
Target:  5'- cACGCAg----CAACACGCGCACGc-- -3'
miRNA:   3'- -UGCGUagcgaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 124984 0.7 0.809488
Target:  5'- cGCGCGUcCGCUUuacgugcaaguuGGCGuCGgGCACGUUGu -3'
miRNA:   3'- -UGCGUA-GCGAG------------UUGU-GCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 107835 0.7 0.809488
Target:  5'- cGCGCccggugCGCcuugCGACGCGCGCGaGUUGg -3'
miRNA:   3'- -UGCGua----GCGa---GUUGUGCGCGUgCAAC- -5'
6804 3' -53.4 NC_001875.2 + 92507 0.7 0.800352
Target:  5'- gGCGCAaaacgggCGCUCGuGCGCGCccgGCGCGUUu -3'
miRNA:   3'- -UGCGUa------GCGAGU-UGUGCG---CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 57326 0.7 0.800352
Target:  5'- gACGCAauugUUGCggCAGCGCuGCGCGCGgcGa -3'
miRNA:   3'- -UGCGU----AGCGa-GUUGUG-CGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 42724 0.7 0.800352
Target:  5'- gGCGCAcccggucgUCGCgcgCGGCgACGCGCAUGgUGa -3'
miRNA:   3'- -UGCGU--------AGCGa--GUUG-UGCGCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 47665 0.7 0.800352
Target:  5'- aACGCAcggaCGCggccgCGGCGCGCcGCGCGUUu -3'
miRNA:   3'- -UGCGUa---GCGa----GUUGUGCG-CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 48518 0.7 0.791054
Target:  5'- gGCGCGcCGCcCGGCGCGCGCcccGCGg-- -3'
miRNA:   3'- -UGCGUaGCGaGUUGUGCGCG---UGCaac -5'
6804 3' -53.4 NC_001875.2 + 38274 0.7 0.791054
Target:  5'- aGCGCcUCGC--AGCGCGCGUACGa-- -3'
miRNA:   3'- -UGCGuAGCGagUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 42052 0.7 0.82724
Target:  5'- cGCGCugCGUUCGcGCACGUGCACGa-- -3'
miRNA:   3'- -UGCGuaGCGAGU-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 82720 0.7 0.830702
Target:  5'- cGCGCAggggcacggggcagCGCUU--UACGCGCACGUa- -3'
miRNA:   3'- -UGCGUa-------------GCGAGuuGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 59915 0.7 0.800352
Target:  5'- cGCGCGgucaaggCGCUCGcCgACGCGCACGc-- -3'
miRNA:   3'- -UGCGUa------GCGAGUuG-UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 21773 0.7 0.800352
Target:  5'- cGCGCAgCGuCUCuGCGCGCGaCACGg-- -3'
miRNA:   3'- -UGCGUaGC-GAGuUGUGCGC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 79841 0.7 0.800352
Target:  5'- cUGCGU-GCUCAGCugGCuaAUGUUGg -3'
miRNA:   3'- uGCGUAgCGAGUUGugCGcgUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 89093 0.7 0.791054
Target:  5'- aGCGCGcCGCUCAccaugcgcgucGC-CGCGCGCGa-- -3'
miRNA:   3'- -UGCGUaGCGAGU-----------UGuGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 32258 0.7 0.791054
Target:  5'- uGCGCGcCGC-CuuuuAUACGCGCGCGUa- -3'
miRNA:   3'- -UGCGUaGCGaGu---UGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 50492 0.7 0.781604
Target:  5'- gGCGCGUgCGCgcggcacCAGCGCGCcGCGCGg-- -3'
miRNA:   3'- -UGCGUA-GCGa------GUUGUGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 124916 0.7 0.781604
Target:  5'- gACGCGUUGCUCAcguACGUGUugGUc- -3'
miRNA:   3'- -UGCGUAGCGAGUug-UGCGCGugCAac -5'
6804 3' -53.4 NC_001875.2 + 114233 0.7 0.781604
Target:  5'- -aGCAacUUGCUCAGCugGCGCAUc--- -3'
miRNA:   3'- ugCGU--AGCGAGUUGugCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 26671 0.7 0.781604
Target:  5'- gAUGCAcaugaugacuUCGCcCAACACGCGCcgcGCGUUc -3'
miRNA:   3'- -UGCGU----------AGCGaGUUGUGCGCG---UGCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.