miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 58007 0.73 0.670462
Target:  5'- aGCGCGUUGCUCGaacgcaaccaauGCAcaaaccgcucguCGCGCAgGUUGg -3'
miRNA:   3'- -UGCGUAGCGAGU------------UGU------------GCGCGUgCAAC- -5'
6804 3' -53.4 NC_001875.2 + 113810 0.72 0.680928
Target:  5'- uCGCAUUGCacgUCAAUGuCGCGCGCGUa- -3'
miRNA:   3'- uGCGUAGCG---AGUUGU-GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 130294 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130162 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 66046 0.72 0.701721
Target:  5'- cGCGCAggcaccgcgCGC-CGACGcCGCGCGCGUg- -3'
miRNA:   3'- -UGCGUa--------GCGaGUUGU-GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 5588 0.72 0.701721
Target:  5'- uGCGUGUCGCgucgCAACagauGCGUGCACGg-- -3'
miRNA:   3'- -UGCGUAGCGa---GUUG----UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 130036 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130228 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 74301 0.72 0.712029
Target:  5'- aGCGCAUCGCcuaCGGCGCGCaggcgccggacaGCACGg-- -3'
miRNA:   3'- -UGCGUAGCGa--GUUGUGCG------------CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 77482 0.72 0.712029
Target:  5'- uGCGC-UCGCcCAACGCGCcggGCGCGUc- -3'
miRNA:   3'- -UGCGuAGCGaGUUGUGCG---CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 4583 0.72 0.722265
Target:  5'- cCGCAU-GCcCGACAUGCGCACGa-- -3'
miRNA:   3'- uGCGUAgCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 573 0.71 0.732419
Target:  5'- gUGCAagUCGUUCAACGCGuCGCACa--- -3'
miRNA:   3'- uGCGU--AGCGAGUUGUGC-GCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 51956 0.71 0.732419
Target:  5'- gGCGCGaCGUgCcGCACGCGCGCGcgUGg -3'
miRNA:   3'- -UGCGUaGCGaGuUGUGCGCGUGCa-AC- -5'
6804 3' -53.4 NC_001875.2 + 124919 0.71 0.732419
Target:  5'- cGCGCGguccaCGCccUCGGCcgaGCGCACGUUGg -3'
miRNA:   3'- -UGCGUa----GCG--AGUUGug-CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 101384 0.71 0.741479
Target:  5'- uUGCAaacgCGCgCAACGCGCGCcagcugcGCGUUGg -3'
miRNA:   3'- uGCGUa---GCGaGUUGUGCGCG-------UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 89778 0.71 0.742481
Target:  5'- gGCGacgCGCUCGuGCACGUGCGCGa-- -3'
miRNA:   3'- -UGCguaGCGAGU-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 81342 0.71 0.742481
Target:  5'- cGCGCGgcgCGCUgGugcCGCGCGCACGc-- -3'
miRNA:   3'- -UGCGUa--GCGAgUu--GUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 54974 0.71 0.75244
Target:  5'- gACGCGUCGCUCGcGCugGgCGCcuuuCGUUu -3'
miRNA:   3'- -UGCGUAGCGAGU-UGugC-GCGu---GCAAc -5'
6804 3' -53.4 NC_001875.2 + 37353 0.71 0.75244
Target:  5'- cGCGCGgccgcgCGCUCGugcgaACGCGCGCGCc--- -3'
miRNA:   3'- -UGCGUa-----GCGAGU-----UGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 21100 0.71 0.75244
Target:  5'- uCGCcgCGCUUAaacuGCACGCGCcccGCGUUc -3'
miRNA:   3'- uGCGuaGCGAGU----UGUGCGCG---UGCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.