miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 36476 0.71 0.75244
Target:  5'- gACGCcguuuucCGC-CGACGCGUGCACGUg- -3'
miRNA:   3'- -UGCGua-----GCGaGUUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 21100 0.71 0.75244
Target:  5'- uCGCcgCGCUUAaacuGCACGCGCcccGCGUUc -3'
miRNA:   3'- uGCGuaGCGAGU----UGUGCGCG---UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 42592 0.71 0.762288
Target:  5'- cGCGCGUCaGCUCGGCGCuGgGCACc--- -3'
miRNA:   3'- -UGCGUAG-CGAGUUGUG-CgCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 18280 0.71 0.762288
Target:  5'- cGCGCcgUGCgCGAC-CGCGC-CGUUGa -3'
miRNA:   3'- -UGCGuaGCGaGUUGuGCGCGuGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 54932 0.71 0.762288
Target:  5'- uCGuCGUCGCUgGGCgccgccccuuuGCGCGCGCGUUu -3'
miRNA:   3'- uGC-GUAGCGAgUUG-----------UGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 125197 0.71 0.762288
Target:  5'- uGCGCGU-GCUgGGCACGUuuaGCACGUUu -3'
miRNA:   3'- -UGCGUAgCGAgUUGUGCG---CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 92505 0.71 0.762288
Target:  5'- aGCGuCAggcugCGCcugCAGCGCGCGCACGc-- -3'
miRNA:   3'- -UGC-GUa----GCGa--GUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 53382 0.71 0.772012
Target:  5'- gGCGCAgcgagCGCUUuuGCGgGCGCACGa-- -3'
miRNA:   3'- -UGCGUa----GCGAGu-UGUgCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 89347 0.71 0.772012
Target:  5'- gGCGCA-CGCggaCGACgGCGUGCGCGUg- -3'
miRNA:   3'- -UGCGUaGCGa--GUUG-UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 8830 0.71 0.772012
Target:  5'- gGCGCGcccaacaccaacUCaUUCAGCugGCGCACGUg- -3'
miRNA:   3'- -UGCGU------------AGcGAGUUGugCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 98935 0.71 0.772012
Target:  5'- uGCGCGU-GCgCGACGCGCGCGUGUUc -3'
miRNA:   3'- -UGCGUAgCGaGUUGUGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 66923 0.71 0.772012
Target:  5'- gGCGCAcaaugucgucgUCGCUCuGCGCGCGCuuGa-- -3'
miRNA:   3'- -UGCGU-----------AGCGAGuUGUGCGCGugCaac -5'
6804 3' -53.4 NC_001875.2 + 52525 0.71 0.772012
Target:  5'- aGCGCcgCGCUCAucgaaaGCACGCGC-Ca--- -3'
miRNA:   3'- -UGCGuaGCGAGU------UGUGCGCGuGcaac -5'
6804 3' -53.4 NC_001875.2 + 26671 0.7 0.781604
Target:  5'- gAUGCAcaugaugacuUCGCcCAACACGCGCcgcGCGUUc -3'
miRNA:   3'- -UGCGU----------AGCGaGUUGUGCGCG---UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 11169 0.7 0.781604
Target:  5'- cGCGCG-CGCaUCGACAaguUGCGCGcCGUUGu -3'
miRNA:   3'- -UGCGUaGCG-AGUUGU---GCGCGU-GCAAC- -5'
6804 3' -53.4 NC_001875.2 + 114233 0.7 0.781604
Target:  5'- -aGCAacUUGCUCAGCugGCGCAUc--- -3'
miRNA:   3'- ugCGU--AGCGAGUUGugCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 124916 0.7 0.781604
Target:  5'- gACGCGUUGCUCAcguACGUGUugGUc- -3'
miRNA:   3'- -UGCGUAGCGAGUug-UGCGCGugCAac -5'
6804 3' -53.4 NC_001875.2 + 50492 0.7 0.781604
Target:  5'- gGCGCGUgCGCgcggcacCAGCGCGCcGCGCGg-- -3'
miRNA:   3'- -UGCGUA-GCGa------GUUGUGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 38274 0.7 0.791054
Target:  5'- aGCGCcUCGC--AGCGCGCGUACGa-- -3'
miRNA:   3'- -UGCGuAGCGagUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 48518 0.7 0.791054
Target:  5'- gGCGCGcCGCcCGGCGCGCGCcccGCGg-- -3'
miRNA:   3'- -UGCGUaGCGaGUUGUGCGCG---UGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.