miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 82720 0.7 0.830702
Target:  5'- cGCGCAggggcacggggcagCGCUU--UACGCGCACGUa- -3'
miRNA:   3'- -UGCGUa-------------GCGAGuuGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 113858 0.69 0.835838
Target:  5'- cCGCA-CGUUgAACGCGgGCACGUc- -3'
miRNA:   3'- uGCGUaGCGAgUUGUGCgCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 40850 0.69 0.835838
Target:  5'- gGCGC-UCGC-CAAgACGCGCACc--- -3'
miRNA:   3'- -UGCGuAGCGaGUUgUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 113153 0.69 0.835838
Target:  5'- gUGCA-CGC-CGGCGCGCGCGcCGUUu -3'
miRNA:   3'- uGCGUaGCGaGUUGUGCGCGU-GCAAc -5'
6804 3' -53.4 NC_001875.2 + 23803 0.69 0.844239
Target:  5'- gACGUGUCGCUCcGCggcgucggGCGCGC-CGUg- -3'
miRNA:   3'- -UGCGUAGCGAGuUG--------UGCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 33800 0.69 0.844239
Target:  5'- gGCGCAcUUGCccgUCGGCGCacgGCGCGCGggGg -3'
miRNA:   3'- -UGCGU-AGCG---AGUUGUG---CGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 41449 0.69 0.844239
Target:  5'- cGCGCAcaggCGCcgguugCGGCGCGCGCgGCGUg- -3'
miRNA:   3'- -UGCGUa---GCGa-----GUUGUGCGCG-UGCAac -5'
6804 3' -53.4 NC_001875.2 + 31140 0.69 0.844239
Target:  5'- gUGCAU-GCUUAACGCGCcGCGCGcgGa -3'
miRNA:   3'- uGCGUAgCGAGUUGUGCG-CGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 37043 0.69 0.852436
Target:  5'- gUGCAcggCGCgu-GCACGCGCGCGg-- -3'
miRNA:   3'- uGCGUa--GCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 91192 0.69 0.852436
Target:  5'- cGCGCAacaGC-CGGCGCGUGCGCGc-- -3'
miRNA:   3'- -UGCGUag-CGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 93682 0.69 0.852436
Target:  5'- gGCGC-UCGCguu-CACGCGCAUGg-- -3'
miRNA:   3'- -UGCGuAGCGaguuGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 39583 0.69 0.859632
Target:  5'- cCGCGcUGCUCAGCacgguccGCGUGCACGg-- -3'
miRNA:   3'- uGCGUaGCGAGUUG-------UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 122101 0.69 0.860421
Target:  5'- -gGCGguggaCGCUCAACACGUGcCACGc-- -3'
miRNA:   3'- ugCGUa----GCGAGUUGUGCGC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 67562 0.69 0.860421
Target:  5'- cACGCGUCGCaCAuUAUGUGCACcUUGa -3'
miRNA:   3'- -UGCGUAGCGaGUuGUGCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 34425 0.69 0.863554
Target:  5'- gGCGCGUUGCgcaaauucacgcccaUCAACGCcauGCGCGCGc-- -3'
miRNA:   3'- -UGCGUAGCG---------------AGUUGUG---CGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 101450 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCuuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 101516 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130522 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 101582 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130360 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaagUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.