miRNA display CGI


Results 101 - 120 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 101186 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCuuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 101120 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 101516 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130360 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaagUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130522 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 35742 0.68 0.875728
Target:  5'- cCGCGUCGgUCAGCuCGCGCuucauuuuagucACGUg- -3'
miRNA:   3'- uGCGUAGCgAGUUGuGCGCG------------UGCAac -5'
6804 3' -53.4 NC_001875.2 + 5167 0.68 0.875728
Target:  5'- cCGCAaCGUgcucgUCAGCGCGUGCAUGgcGg -3'
miRNA:   3'- uGCGUaGCG-----AGUUGUGCGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 84574 0.68 0.875728
Target:  5'- aGCGCGUC-CUCGgucgugacccGCugGUGCACGa-- -3'
miRNA:   3'- -UGCGUAGcGAGU----------UGugCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 130548 0.68 0.883038
Target:  5'- cCGCAUCGUUCAcCACGuCGaCGCGc-- -3'
miRNA:   3'- uGCGUAGCGAGUuGUGC-GC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 113362 0.68 0.883038
Target:  5'- cUGCGUCGCUgCGGCGCG-GCGCa--- -3'
miRNA:   3'- uGCGUAGCGA-GUUGUGCgCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 12786 0.68 0.883038
Target:  5'- gGCGCcgCGC---ACAUGCGCACGc-- -3'
miRNA:   3'- -UGCGuaGCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 19109 0.68 0.883038
Target:  5'- cCGUGUUGCUguGCGCGCGaCGCGc-- -3'
miRNA:   3'- uGCGUAGCGAguUGUGCGC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 44792 0.68 0.883038
Target:  5'- -aGCAcCGCUUugAACACGUGCGCuUUGa -3'
miRNA:   3'- ugCGUaGCGAG--UUGUGCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 77406 0.68 0.890112
Target:  5'- gACGaCAUUgaaaaGCagGGCaACGCGCGCGUUGg -3'
miRNA:   3'- -UGC-GUAG-----CGagUUG-UGCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 81818 0.68 0.890112
Target:  5'- cCGCcUCGCcgcccggCGACACGCGCGCc--- -3'
miRNA:   3'- uGCGuAGCGa------GUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 99563 0.68 0.890112
Target:  5'- gUGUAUCuGCgauaaGAUACGCGCGCGUa- -3'
miRNA:   3'- uGCGUAG-CGag---UUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 65216 0.68 0.890112
Target:  5'- aACGCuGUUGCUCaAGCGCGC-CACGcUGc -3'
miRNA:   3'- -UGCG-UAGCGAG-UUGUGCGcGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 75357 0.68 0.894241
Target:  5'- cACGUuuuuucauuuggCGCUgacCAACACGCGCGCGg-- -3'
miRNA:   3'- -UGCGua----------GCGA---GUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 33399 0.68 0.896273
Target:  5'- uGCGCGguagCGCUCGuggcugaGCugGCGCuCGUc- -3'
miRNA:   3'- -UGCGUa---GCGAGU-------UGugCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 11966 0.68 0.896946
Target:  5'- gGCGCGUUGCaaAGCACugGCGacgGCGUUGg -3'
miRNA:   3'- -UGCGUAGCGagUUGUG--CGCg--UGCAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.