Results 41 - 60 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6804 | 3' | -53.4 | NC_001875.2 | + | 97378 | 0.66 | 0.942621 |
Target: 5'- cUGCca-GCUCAgguuuugcuGCGCGCGCaugGCGUUGa -3' miRNA: 3'- uGCGuagCGAGU---------UGUGCGCG---UGCAAC- -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 125623 | 0.66 | 0.942621 |
Target: 5'- gGCGUGUCGC-CGACGgacgcaauUGCGCGCuUUGa -3' miRNA: 3'- -UGCGUAGCGaGUUGU--------GCGCGUGcAAC- -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 32950 | 0.66 | 0.94215 |
Target: 5'- uGCGCGcCGCUCGccaugucGCccguguuuacgACGCGCACGg-- -3' miRNA: 3'- -UGCGUaGCGAGU-------UG-----------UGCGCGUGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 94608 | 0.67 | 0.939756 |
Target: 5'- gGCGguUCGCUgagcugcagcggCGGCacaacgugauacauuACGCGCACGUUu -3' miRNA: 3'- -UGCguAGCGA------------GUUG---------------UGCGCGUGCAAc -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 57714 | 0.67 | 0.937795 |
Target: 5'- aACGCGUCGUcgcgCGACaccgcaaagucGCGCGgCGCGUa- -3' miRNA: 3'- -UGCGUAGCGa---GUUG-----------UGCGC-GUGCAac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 98401 | 0.67 | 0.937795 |
Target: 5'- -gGCcgCGCUgAACGCGCucacGCACGa-- -3' miRNA: 3'- ugCGuaGCGAgUUGUGCG----CGUGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 34284 | 0.67 | 0.937795 |
Target: 5'- gGCGuCAaCGCUUuguGGCAcuCGUGCGCGUUGc -3' miRNA: 3'- -UGC-GUaGCGAG---UUGU--GCGCGUGCAAC- -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 91126 | 0.67 | 0.937795 |
Target: 5'- -gGCGUUGUagUUgauGACGCGCGCGCGgcGg -3' miRNA: 3'- ugCGUAGCG--AG---UUGUGCGCGUGCaaC- -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 110811 | 0.67 | 0.937795 |
Target: 5'- aACGCcgCGCagGugGaCGCGCugGUg- -3' miRNA: 3'- -UGCGuaGCGagUugU-GCGCGugCAac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 44159 | 0.67 | 0.937795 |
Target: 5'- cACGuCGUCGCUCuccucgauuucGCACGCGCugaccgucggcGCGUg- -3' miRNA: 3'- -UGC-GUAGCGAGu----------UGUGCGCG-----------UGCAac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 113565 | 0.67 | 0.937795 |
Target: 5'- gGCGCgGUCGCgcaCGGCGCGCcauugggccaGCACGg-- -3' miRNA: 3'- -UGCG-UAGCGa--GUUGUGCG----------CGUGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 85247 | 0.67 | 0.937795 |
Target: 5'- aGCGCGgguuccgCGCUCGGCGCG-GaCACGa-- -3' miRNA: 3'- -UGCGUa------GCGAGUUGUGCgC-GUGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 90023 | 0.67 | 0.932718 |
Target: 5'- cGCGCAacUgGCcgCGGCGCcgGCGCGCGUg- -3' miRNA: 3'- -UGCGU--AgCGa-GUUGUG--CGCGUGCAac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 10494 | 0.67 | 0.932718 |
Target: 5'- cCGgGUCGCaaAACAUGCGCACu--- -3' miRNA: 3'- uGCgUAGCGagUUGUGCGCGUGcaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 93561 | 0.67 | 0.932718 |
Target: 5'- cCGCGUCGUcguACGCGCGCuGCGa-- -3' miRNA: 3'- uGCGUAGCGaguUGUGCGCG-UGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 65361 | 0.67 | 0.932718 |
Target: 5'- uACGU---GCUCAACgaaaaaaaccGCGCGCGCGUg- -3' miRNA: 3'- -UGCGuagCGAGUUG----------UGCGCGUGCAac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 24003 | 0.67 | 0.932718 |
Target: 5'- cGCGCGUCGCaaGGCGCaccGgGCGCGg-- -3' miRNA: 3'- -UGCGUAGCGagUUGUG---CgCGUGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 69595 | 0.67 | 0.932718 |
Target: 5'- uACGUGUggCGCUUuACGCgGCGCGCGUc- -3' miRNA: 3'- -UGCGUA--GCGAGuUGUG-CGCGUGCAac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 21897 | 0.67 | 0.932197 |
Target: 5'- cACGUcgCGCUgcuccgcggugagCGGCGCGUGCAUGg-- -3' miRNA: 3'- -UGCGuaGCGA-------------GUUGUGCGCGUGCaac -5' |
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6804 | 3' | -53.4 | NC_001875.2 | + | 97715 | 0.67 | 0.931146 |
Target: 5'- uCGUAUUGCUUcgcgcuagaccgcgAGCGCGCGCGCu--- -3' miRNA: 3'- uGCGUAGCGAG--------------UUGUGCGCGUGcaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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