miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 68748 0.67 0.927387
Target:  5'- -aGCgGUUGCUCGACACGCugguGCACa--- -3'
miRNA:   3'- ugCG-UAGCGAGUUGUGCG----CGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 3016 0.67 0.927387
Target:  5'- uGCGCGUCGCcgugCAaguuguACACGCcguugggcaGCGCGUa- -3'
miRNA:   3'- -UGCGUAGCGa---GU------UGUGCG---------CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 37152 0.67 0.927387
Target:  5'- uGCGCAUCGCcggguucCAGCACccgugcCGCGCGcUGg -3'
miRNA:   3'- -UGCGUAGCGa------GUUGUGc-----GCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 93630 0.67 0.927387
Target:  5'- aGCGCAUCGaggcCAACuuuacccacuACGaGCACGUUGa -3'
miRNA:   3'- -UGCGUAGCga--GUUG----------UGCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 94798 0.67 0.927387
Target:  5'- cCGCG-CGCgugCAGCGcCGUGCACGg-- -3'
miRNA:   3'- uGCGUaGCGa--GUUGU-GCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 62605 0.67 0.927387
Target:  5'- aGCGCGcCGUUCGACGC-CGC-CGUg- -3'
miRNA:   3'- -UGCGUaGCGAGUUGUGcGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 111191 0.67 0.927387
Target:  5'- gGCGCGcUGggCGGCGCGCGC-CGUUu -3'
miRNA:   3'- -UGCGUaGCgaGUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 3343 0.67 0.927387
Target:  5'- gGCGCcUCGUgucCGGuCACGCGCAUGa-- -3'
miRNA:   3'- -UGCGuAGCGa--GUU-GUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 29291 0.67 0.927387
Target:  5'- gGCGCgGUCGUgUGGCGuguCGUGCGCGUUGu -3'
miRNA:   3'- -UGCG-UAGCGaGUUGU---GCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 54006 0.67 0.927387
Target:  5'- cGCGCA-CGgcCUUGGCgGCGCGCGCGUa- -3'
miRNA:   3'- -UGCGUaGC--GAGUUG-UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 114234 0.67 0.927387
Target:  5'- uCGuCGUCGCUgGACGCGgGCcgcaGCGUg- -3'
miRNA:   3'- uGC-GUAGCGAgUUGUGCgCG----UGCAac -5'
6804 3' -53.4 NC_001875.2 + 86400 0.67 0.924067
Target:  5'- aGCGCcgaGUUCGACGCGCaaaacaaccugcgcgGCACGUUu -3'
miRNA:   3'- -UGCGuagCGAGUUGUGCG---------------CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 46010 0.67 0.921803
Target:  5'- aACGCGgugcacgaCGUgcugauuuugauUCAACACGCGCGCGc-- -3'
miRNA:   3'- -UGCGUa-------GCG------------AGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 68849 0.67 0.921803
Target:  5'- gACGgGUCGC---ACGCGUGCGCGa-- -3'
miRNA:   3'- -UGCgUAGCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 59114 0.67 0.921803
Target:  5'- -gGCGUCGCUggcCGACGCGCaaGCGCa--- -3'
miRNA:   3'- ugCGUAGCGA---GUUGUGCG--CGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 103321 0.67 0.921803
Target:  5'- gGCGUGcCGggCGACGCGUGCGCGa-- -3'
miRNA:   3'- -UGCGUaGCgaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 104517 0.67 0.921803
Target:  5'- aACGcCGUCcgGCUUuuGCACGCGCAUGg-- -3'
miRNA:   3'- -UGC-GUAG--CGAGu-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 58075 0.67 0.921803
Target:  5'- cGCGCugucggCGgUCuGGCGCguGCGCACGUUGu -3'
miRNA:   3'- -UGCGua----GCgAG-UUGUG--CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 100823 0.67 0.921803
Target:  5'- cGCGCGauucgaUUGCcaagUCGGcCGCGCGCGCGUa- -3'
miRNA:   3'- -UGCGU------AGCG----AGUU-GUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 52829 0.67 0.921803
Target:  5'- aGCGCG-CGaCUCgGACACGCuguccaGCugGUUGa -3'
miRNA:   3'- -UGCGUaGC-GAG-UUGUGCG------CGugCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.