miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 104517 0.67 0.921803
Target:  5'- aACGcCGUCcgGCUUuuGCACGCGCAUGg-- -3'
miRNA:   3'- -UGC-GUAG--CGAGu-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 73134 0.67 0.92123
Target:  5'- uGCGCGUCGCgcuguACACGCucuccacaacgcuGUACGUg- -3'
miRNA:   3'- -UGCGUAGCGagu--UGUGCG-------------CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 122241 0.67 0.915965
Target:  5'- aACGCGUCGUU--GCACGCGCcCa--- -3'
miRNA:   3'- -UGCGUAGCGAguUGUGCGCGuGcaac -5'
6804 3' -53.4 NC_001875.2 + 122202 0.67 0.915965
Target:  5'- uCGCGaaacaCGCaCGGCGCGCGCACGc-- -3'
miRNA:   3'- uGCGUa----GCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 64894 0.67 0.915965
Target:  5'- uCGuCGaCGCUCAGCuguCGCGCcuCGUUGa -3'
miRNA:   3'- uGC-GUaGCGAGUUGu--GCGCGu-GCAAC- -5'
6804 3' -53.4 NC_001875.2 + 126308 0.67 0.912341
Target:  5'- aACGCG-CGcCUCAACGgcggccggcguaaacUGCGCGCGUg- -3'
miRNA:   3'- -UGCGUaGC-GAGUUGU---------------GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 16846 0.67 0.909875
Target:  5'- cCGCcgauUCGCUacGCGgGCGCACGUg- -3'
miRNA:   3'- uGCGu---AGCGAguUGUgCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 96841 0.67 0.909875
Target:  5'- cGCGCcUUGUUugaCGGCGCGCGCACa--- -3'
miRNA:   3'- -UGCGuAGCGA---GUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 92609 0.67 0.909875
Target:  5'- gUGCAgaguggugggCGCgagCGGCuuGCGCGCGUUGu -3'
miRNA:   3'- uGCGUa---------GCGa--GUUGugCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 119892 0.67 0.909875
Target:  5'- aACGCGcCGC-CGGuCGCGCGCACa--- -3'
miRNA:   3'- -UGCGUaGCGaGUU-GUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 20729 0.67 0.909875
Target:  5'- gACGCAUUGCU--GC-CGUGCACGc-- -3'
miRNA:   3'- -UGCGUAGCGAguUGuGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 118286 0.67 0.909875
Target:  5'- cACGCAagagUgGCUgCAGCugGCGCGC-UUGc -3'
miRNA:   3'- -UGCGU----AgCGA-GUUGugCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 100730 0.67 0.909875
Target:  5'- cUGCggCGCgCGGCACGCGUuCGUUa -3'
miRNA:   3'- uGCGuaGCGaGUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 29555 0.67 0.909875
Target:  5'- cGCGCcaAUUGCUCGggagcucauucuGCaACGCGCGCGa-- -3'
miRNA:   3'- -UGCG--UAGCGAGU------------UG-UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 119474 0.67 0.909875
Target:  5'- aACGCGUCgGCcaaCGACAUGCuGCGCGa-- -3'
miRNA:   3'- -UGCGUAG-CGa--GUUGUGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 84302 0.67 0.909252
Target:  5'- uACGCGUCGCgaagacgcugaacUCGACACGuCGCuCGc-- -3'
miRNA:   3'- -UGCGUAGCG-------------AGUUGUGC-GCGuGCaac -5'
6804 3' -53.4 NC_001875.2 + 80632 0.68 0.903534
Target:  5'- aACGCG-CGCUCGACGgGCgGCGCc--- -3'
miRNA:   3'- -UGCGUaGCGAGUUGUgCG-CGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 33201 0.68 0.903534
Target:  5'- aGCGCcUCGCUgccggcaAACGCGgGCGCGg-- -3'
miRNA:   3'- -UGCGuAGCGAg------UUGUGCgCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 28525 0.68 0.903534
Target:  5'- cACGCGUCGCcCGGCACGcCGguCa--- -3'
miRNA:   3'- -UGCGUAGCGaGUUGUGC-GCguGcaac -5'
6804 3' -53.4 NC_001875.2 + 95178 0.68 0.903534
Target:  5'- cGCGCcccgaGCUCA--GCGCGCACGa-- -3'
miRNA:   3'- -UGCGuag--CGAGUugUGCGCGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.