miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 573 0.71 0.732419
Target:  5'- gUGCAagUCGUUCAACGCGuCGCACa--- -3'
miRNA:   3'- uGCGU--AGCGAGUUGUGC-GCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 3016 0.67 0.927387
Target:  5'- uGCGCGUCGCcgugCAaguuguACACGCcguugggcaGCGCGUa- -3'
miRNA:   3'- -UGCGUAGCGa---GU------UGUGCG---------CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 3343 0.67 0.927387
Target:  5'- gGCGCcUCGUgucCGGuCACGCGCAUGa-- -3'
miRNA:   3'- -UGCGuAGCGa--GUU-GUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 4583 0.72 0.722265
Target:  5'- cCGCAU-GCcCGACAUGCGCACGa-- -3'
miRNA:   3'- uGCGUAgCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 5167 0.68 0.875728
Target:  5'- cCGCAaCGUgcucgUCAGCGCGUGCAUGgcGg -3'
miRNA:   3'- uGCGUaGCG-----AGUUGUGCGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 5588 0.72 0.701721
Target:  5'- uGCGUGUCGCgucgCAACagauGCGUGCACGg-- -3'
miRNA:   3'- -UGCGUAGCGa---GUUG----UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 8830 0.71 0.772012
Target:  5'- gGCGCGcccaacaccaacUCaUUCAGCugGCGCACGUg- -3'
miRNA:   3'- -UGCGU------------AGcGAGUUGugCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 9901 0.66 0.95945
Target:  5'- uGCGCucaCGUuacucgCGACugGCGCGCGg-- -3'
miRNA:   3'- -UGCGua-GCGa-----GUUGugCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 10494 0.67 0.932718
Target:  5'- cCGgGUCGCaaAACAUGCGCACu--- -3'
miRNA:   3'- uGCgUAGCGagUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 11169 0.7 0.781604
Target:  5'- cGCGCG-CGCaUCGACAaguUGCGCGcCGUUGu -3'
miRNA:   3'- -UGCGUaGCG-AGUUGU---GCGCGU-GCAAC- -5'
6804 3' -53.4 NC_001875.2 + 11966 0.68 0.896946
Target:  5'- gGCGCGUUGCaaAGCACugGCGacgGCGUUGg -3'
miRNA:   3'- -UGCGUAGCGagUUGUG--CGCg--UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 12659 0.68 0.896946
Target:  5'- cAUGCuGUUGUU-GACGCGCGCcGCGUUGg -3'
miRNA:   3'- -UGCG-UAGCGAgUUGUGCGCG-UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 12786 0.68 0.883038
Target:  5'- gGCGCcgCGC---ACAUGCGCACGc-- -3'
miRNA:   3'- -UGCGuaGCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 13634 0.76 0.484542
Target:  5'- aACGCGUCGCUCAACAUcuugaGCGCAa---- -3'
miRNA:   3'- -UGCGUAGCGAGUUGUG-----CGCGUgcaac -5'
6804 3' -53.4 NC_001875.2 + 16846 0.67 0.909875
Target:  5'- cCGCcgauUCGCUacGCGgGCGCACGUg- -3'
miRNA:   3'- uGCGu---AGCGAguUGUgCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 18280 0.71 0.762288
Target:  5'- cGCGCcgUGCgCGAC-CGCGC-CGUUGa -3'
miRNA:   3'- -UGCGuaGCGaGUUGuGCGCGuGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 18497 0.66 0.95945
Target:  5'- gACGCAgccgCGCcCGACcCGCcGCACGa-- -3'
miRNA:   3'- -UGCGUa---GCGaGUUGuGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 19006 0.73 0.670462
Target:  5'- cGCGCAggccgcaacgCGCUUuGCACGUGCGCGg-- -3'
miRNA:   3'- -UGCGUa---------GCGAGuUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 19109 0.68 0.883038
Target:  5'- cCGUGUUGCUguGCGCGCGaCGCGc-- -3'
miRNA:   3'- uGCGUAGCGAguUGUGCGC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 19867 0.67 0.921803
Target:  5'- cCGCGUCGCg--GCGCGgGCGcCGUUu -3'
miRNA:   3'- uGCGUAGCGaguUGUGCgCGU-GCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.