miRNA display CGI


Results 21 - 40 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 20729 0.67 0.909875
Target:  5'- gACGCAUUGCU--GC-CGUGCACGc-- -3'
miRNA:   3'- -UGCGUAGCGAguUGuGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 21100 0.71 0.75244
Target:  5'- uCGCcgCGCUUAaacuGCACGCGCcccGCGUUc -3'
miRNA:   3'- uGCGuaGCGAGU----UGUGCGCG---UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 21773 0.7 0.800352
Target:  5'- cGCGCAgCGuCUCuGCGCGCGaCACGg-- -3'
miRNA:   3'- -UGCGUaGC-GAGuUGUGCGC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 21841 0.7 0.82724
Target:  5'- uGCGCG-CGCgUCAACgccaccgaccGCGCGUACGUg- -3'
miRNA:   3'- -UGCGUaGCG-AGUUG----------UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 21897 0.67 0.932197
Target:  5'- cACGUcgCGCUgcuccgcggugagCGGCGCGUGCAUGg-- -3'
miRNA:   3'- -UGCGuaGCGA-------------GUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 23271 0.66 0.95945
Target:  5'- aGCGCAgCGC-CAGCAccgcCGCGC-CGUa- -3'
miRNA:   3'- -UGCGUaGCGaGUUGU----GCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 23803 0.69 0.844239
Target:  5'- gACGUGUCGCUCcGCggcgucggGCGCGC-CGUg- -3'
miRNA:   3'- -UGCGUAGCGAGuUG--------UGCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 24003 0.67 0.932718
Target:  5'- cGCGCGUCGCaaGGCGCaccGgGCGCGg-- -3'
miRNA:   3'- -UGCGUAGCGagUUGUG---CgCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 24208 0.66 0.95945
Target:  5'- cUGUggCGCUgAGCGCGCaGUauGCGUUGg -3'
miRNA:   3'- uGCGuaGCGAgUUGUGCG-CG--UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 26671 0.7 0.781604
Target:  5'- gAUGCAcaugaugacuUCGCcCAACACGCGCcgcGCGUUc -3'
miRNA:   3'- -UGCGU----------AGCGaGUUGUGCGCG---UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 26907 0.68 0.896946
Target:  5'- cGCGCG-CGUUCuGCugGCGCAgGg-- -3'
miRNA:   3'- -UGCGUaGCGAGuUGugCGCGUgCaac -5'
6804 3' -53.4 NC_001875.2 + 28525 0.68 0.903534
Target:  5'- cACGCGUCGCcCGGCACGcCGguCa--- -3'
miRNA:   3'- -UGCGUAGCGaGUUGUGC-GCguGcaac -5'
6804 3' -53.4 NC_001875.2 + 29291 0.67 0.927387
Target:  5'- gGCGCgGUCGUgUGGCGuguCGUGCGCGUUGu -3'
miRNA:   3'- -UGCG-UAGCGaGUUGU---GCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 29555 0.67 0.909875
Target:  5'- cGCGCcaAUUGCUCGggagcucauucuGCaACGCGCGCGa-- -3'
miRNA:   3'- -UGCG--UAGCGAGU------------UG-UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 30440 0.76 0.504304
Target:  5'- -aGCGUccaaCGCgCAGCugGCGCGCGUUGc -3'
miRNA:   3'- ugCGUA----GCGaGUUGugCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 30979 0.75 0.555104
Target:  5'- uGCGCcucgCGCUCAaaaagcaagauuACGCGCGCGCGg-- -3'
miRNA:   3'- -UGCGua--GCGAGU------------UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 31140 0.69 0.844239
Target:  5'- gUGCAU-GCUUAACGCGCcGCGCGcgGa -3'
miRNA:   3'- uGCGUAgCGAGUUGUGCG-CGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 32258 0.7 0.791054
Target:  5'- uGCGCGcCGC-CuuuuAUACGCGCGCGUa- -3'
miRNA:   3'- -UGCGUaGCGaGu---UGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 32889 0.73 0.670462
Target:  5'- aGCGCugcaaacgGCUgAACACGCGCGCGUc- -3'
miRNA:   3'- -UGCGuag-----CGAgUUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 32950 0.66 0.94215
Target:  5'- uGCGCGcCGCUCGccaugucGCccguguuuacgACGCGCACGg-- -3'
miRNA:   3'- -UGCGUaGCGAGU-------UG-----------UGCGCGUGCaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.