miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 42052 0.7 0.82724
Target:  5'- cGCGCugCGUUCGcGCACGUGCACGa-- -3'
miRNA:   3'- -UGCGuaGCGAGU-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 42221 0.75 0.543781
Target:  5'- cACGCGUggUGCUUGucaauguGCACGCGCACGUUu -3'
miRNA:   3'- -UGCGUA--GCGAGU-------UGUGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 42349 0.68 0.903534
Target:  5'- aGCGCAgUCGCagCGGCAUGCuCGCGUc- -3'
miRNA:   3'- -UGCGU-AGCGa-GUUGUGCGcGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 42475 0.7 0.82724
Target:  5'- cACGCAg----CAACACGCGCACGc-- -3'
miRNA:   3'- -UGCGUagcgaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 42592 0.71 0.762288
Target:  5'- cGCGCGUCaGCUCGGCGCuGgGCACc--- -3'
miRNA:   3'- -UGCGUAG-CGAGUUGUG-CgCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 42724 0.7 0.800352
Target:  5'- gGCGCAcccggucgUCGCgcgCGGCgACGCGCAUGgUGa -3'
miRNA:   3'- -UGCGU--------AGCGa--GUUG-UGCGCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 43377 0.66 0.951523
Target:  5'- uUGCAUCGcCUUggUaACGCGCACa--- -3'
miRNA:   3'- uGCGUAGC-GAGuuG-UGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 43819 0.66 0.955607
Target:  5'- uGCGCGggCGUUU---GCGCGgGCGUUGg -3'
miRNA:   3'- -UGCGUa-GCGAGuugUGCGCgUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 44159 0.67 0.937795
Target:  5'- cACGuCGUCGCUCuccucgauuucGCACGCGCugaccgucggcGCGUg- -3'
miRNA:   3'- -UGC-GUAGCGAGu----------UGUGCGCG-----------UGCAac -5'
6804 3' -53.4 NC_001875.2 + 44792 0.68 0.883038
Target:  5'- -aGCAcCGCUUugAACACGUGCGCuUUGa -3'
miRNA:   3'- ugCGUaGCGAG--UUGUGCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 45446 0.66 0.942621
Target:  5'- uGCGCGUcgaacucggCGCUCGGCGCccgcagcCGCGCGUc- -3'
miRNA:   3'- -UGCGUA---------GCGAGUUGUGc------GCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 45526 0.66 0.94764
Target:  5'- cACGCAguugCGCcgauuauuaagggcgCAGCACGUGUACGa-- -3'
miRNA:   3'- -UGCGUa---GCGa--------------GUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 46010 0.67 0.921803
Target:  5'- aACGCGgugcacgaCGUgcugauuuugauUCAACACGCGCGCGc-- -3'
miRNA:   3'- -UGCGUa-------GCG------------AGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 47665 0.7 0.800352
Target:  5'- aACGCAcggaCGCggccgCGGCGCGCcGCGCGUUu -3'
miRNA:   3'- -UGCGUa---GCGa----GUUGUGCG-CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 47906 0.75 0.524406
Target:  5'- cGCGCGguggUGCUgccgCAGCACGCGUACGUg- -3'
miRNA:   3'- -UGCGUa---GCGA----GUUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 48518 0.7 0.791054
Target:  5'- gGCGCGcCGCcCGGCGCGCGCcccGCGg-- -3'
miRNA:   3'- -UGCGUaGCGaGUUGUGCGCG---UGCaac -5'
6804 3' -53.4 NC_001875.2 + 50120 0.74 0.575861
Target:  5'- gGCGCAauaauaaacagUCGCUCggUGCGCGCGgGUg- -3'
miRNA:   3'- -UGCGU-----------AGCGAGuuGUGCGCGUgCAac -5'
6804 3' -53.4 NC_001875.2 + 50492 0.7 0.781604
Target:  5'- gGCGCGUgCGCgcggcacCAGCGCGCcGCGCGg-- -3'
miRNA:   3'- -UGCGUA-GCGa------GUUGUGCG-CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 51956 0.71 0.732419
Target:  5'- gGCGCGaCGUgCcGCACGCGCGCGcgUGg -3'
miRNA:   3'- -UGCGUaGCGaGuUGUGCGCGUGCa-AC- -5'
6804 3' -53.4 NC_001875.2 + 52525 0.71 0.772012
Target:  5'- aGCGCcgCGCUCAucgaaaGCACGCGC-Ca--- -3'
miRNA:   3'- -UGCGuaGCGAGU------UGUGCGCGuGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.