miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 52736 0.66 0.947196
Target:  5'- gGCGgAUCGC-CAGCAUuuGCGCGCu--- -3'
miRNA:   3'- -UGCgUAGCGaGUUGUG--CGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 52829 0.67 0.921803
Target:  5'- aGCGCG-CGaCUCgGACACGCuguccaGCugGUUGa -3'
miRNA:   3'- -UGCGUaGC-GAG-UUGUGCG------CGugCAAC- -5'
6804 3' -53.4 NC_001875.2 + 53382 0.71 0.772012
Target:  5'- gGCGCAgcgagCGCUUuuGCGgGCGCACGa-- -3'
miRNA:   3'- -UGCGUa----GCGAGu-UGUgCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 53824 0.66 0.948956
Target:  5'- gGCGCAccgaCGCUC-ACAacucgucaauggucuCGCGCACGcUGg -3'
miRNA:   3'- -UGCGUa---GCGAGuUGU---------------GCGCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 54006 0.67 0.927387
Target:  5'- cGCGCA-CGgcCUUGGCgGCGCGCGCGUa- -3'
miRNA:   3'- -UGCGUaGC--GAGUUG-UGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 54161 0.7 0.82724
Target:  5'- cGCGCAaauacgCGCUCGGacaGCgGCGCuGCGUUGg -3'
miRNA:   3'- -UGCGUa-----GCGAGUUg--UG-CGCG-UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 54333 0.73 0.628362
Target:  5'- uGCGCgugacggucacGUCGUUgGACGCGCccgGCGCGUUGg -3'
miRNA:   3'- -UGCG-----------UAGCGAgUUGUGCG---CGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 54932 0.71 0.762288
Target:  5'- uCGuCGUCGCUgGGCgccgccccuuuGCGCGCGCGUUu -3'
miRNA:   3'- uGC-GUAGCGAgUUG-----------UGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 54974 0.71 0.75244
Target:  5'- gACGCGUCGCUCGcGCugGgCGCcuuuCGUUu -3'
miRNA:   3'- -UGCGUAGCGAGU-UGugC-GCGu---GCAAc -5'
6804 3' -53.4 NC_001875.2 + 57030 0.66 0.955607
Target:  5'- aACGCGcCGCUgGGCGCGuCGUACu--- -3'
miRNA:   3'- -UGCGUaGCGAgUUGUGC-GCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 57326 0.7 0.800352
Target:  5'- gACGCAauugUUGCggCAGCGCuGCGCGCGgcGa -3'
miRNA:   3'- -UGCGU----AGCGa-GUUGUG-CGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 57714 0.67 0.937795
Target:  5'- aACGCGUCGUcgcgCGACaccgcaaagucGCGCGgCGCGUa- -3'
miRNA:   3'- -UGCGUAGCGa---GUUG-----------UGCGC-GUGCAac -5'
6804 3' -53.4 NC_001875.2 + 58007 0.73 0.670462
Target:  5'- aGCGCGUUGCUCGaacgcaaccaauGCAcaaaccgcucguCGCGCAgGUUGg -3'
miRNA:   3'- -UGCGUAGCGAGU------------UGU------------GCGCGUgCAAC- -5'
6804 3' -53.4 NC_001875.2 + 58075 0.67 0.921803
Target:  5'- cGCGCugucggCGgUCuGGCGCguGCGCACGUUGu -3'
miRNA:   3'- -UGCGua----GCgAG-UUGUG--CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 58391 0.66 0.942621
Target:  5'- cGCGCGUCG-UCAACA-GCGCAUuuUUGa -3'
miRNA:   3'- -UGCGUAGCgAGUUGUgCGCGUGc-AAC- -5'
6804 3' -53.4 NC_001875.2 + 59114 0.67 0.921803
Target:  5'- -gGCGUCGCUggcCGACGCGCaaGCGCa--- -3'
miRNA:   3'- ugCGUAGCGA---GUUGUGCG--CGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 59915 0.7 0.800352
Target:  5'- cGCGCGgucaaggCGCUCGcCgACGCGCACGc-- -3'
miRNA:   3'- -UGCGUa------GCGAGUuG-UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 61893 0.66 0.955607
Target:  5'- uCGcCGUgGCcCGACACGCGC-CGUg- -3'
miRNA:   3'- uGC-GUAgCGaGUUGUGCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 62365 1.08 0.005062
Target:  5'- aACGCAUCGCUCAACACGCGCACGUUGu -3'
miRNA:   3'- -UGCGUAGCGAGUUGUGCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 62605 0.67 0.927387
Target:  5'- aGCGCGcCGUUCGACGC-CGC-CGUg- -3'
miRNA:   3'- -UGCGUaGCGAGUUGUGcGCGuGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.