miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 131217 0.76 0.484542
Target:  5'- aACGCAgggcgCGCUUGACaACGCGCugGUg- -3'
miRNA:   3'- -UGCGUa----GCGAGUUG-UGCGCGugCAac -5'
6804 3' -53.4 NC_001875.2 + 130548 0.68 0.883038
Target:  5'- cCGCAUCGUUCAcCACGuCGaCGCGc-- -3'
miRNA:   3'- uGCGUAGCGAGUuGUGC-GC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 130522 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130462 0.73 0.649442
Target:  5'- gACGCAcCGCU-AGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGAgUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130360 0.69 0.868187
Target:  5'- gACGCAcCGCUaaaagUAGCACGCGCcuuucgagaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130294 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130228 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130162 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130036 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 129970 0.66 0.95945
Target:  5'- gACGCAcUGCUaaaaaUAGCACGCGCcuuucaaaaGCGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCG---------UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 128741 0.7 0.818454
Target:  5'- cGCGCGagccgCGCccCGGCGCGUGCACGccgUGg -3'
miRNA:   3'- -UGCGUa----GCGa-GUUGUGCGCGUGCa--AC- -5'
6804 3' -53.4 NC_001875.2 + 126537 0.66 0.95945
Target:  5'- cGCGCAauggaguggUCGUcgGGCGCGgGCACGUc- -3'
miRNA:   3'- -UGCGU---------AGCGagUUGUGCgCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 126308 0.67 0.912341
Target:  5'- aACGCG-CGcCUCAACGgcggccggcguaaacUGCGCGCGUg- -3'
miRNA:   3'- -UGCGUaGC-GAGUUGU---------------GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 125969 0.71 0.75244
Target:  5'- gGCGCAUCgGCgagggcaAACGCGUGCugGUg- -3'
miRNA:   3'- -UGCGUAG-CGag-----UUGUGCGCGugCAac -5'
6804 3' -53.4 NC_001875.2 + 125623 0.66 0.942621
Target:  5'- gGCGUGUCGC-CGACGgacgcaauUGCGCGCuUUGa -3'
miRNA:   3'- -UGCGUAGCGaGUUGU--------GCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 125197 0.71 0.762288
Target:  5'- uGCGCGU-GCUgGGCACGUuuaGCACGUUu -3'
miRNA:   3'- -UGCGUAgCGAgUUGUGCG---CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 124984 0.7 0.809488
Target:  5'- cGCGCGUcCGCUUuacgugcaaguuGGCGuCGgGCACGUUGu -3'
miRNA:   3'- -UGCGUA-GCGAG------------UUGU-GCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 124919 0.71 0.732419
Target:  5'- cGCGCGguccaCGCccUCGGCcgaGCGCACGUUGg -3'
miRNA:   3'- -UGCGUa----GCG--AGUUGug-CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 124916 0.7 0.781604
Target:  5'- gACGCGUUGCUCAcguACGUGUugGUc- -3'
miRNA:   3'- -UGCGUAGCGAGUug-UGCGCGugCAac -5'
6804 3' -53.4 NC_001875.2 + 124728 0.66 0.951523
Target:  5'- gGCGCGUgGCggucaaugUCGGCAgCGCGCGCu--- -3'
miRNA:   3'- -UGCGUAgCG--------AGUUGU-GCGCGUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.