miRNA display CGI


Results 61 - 80 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 100873 0.7 0.818454
Target:  5'- aGCGCGagGCgCAGCGCGCGCGUGg-- -3'
miRNA:   3'- -UGCGUagCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 100823 0.67 0.921803
Target:  5'- cGCGCGauucgaUUGCcaagUCGGcCGCGCGCGCGUa- -3'
miRNA:   3'- -UGCGU------AGCG----AGUU-GUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 100730 0.67 0.909875
Target:  5'- cUGCggCGCgCGGCACGCGUuCGUUa -3'
miRNA:   3'- uGCGuaGCGaGUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 100676 0.68 0.903534
Target:  5'- gGCGCGUuagcacacugucCGaCUCcGCGCGCGgCGCGUUa -3'
miRNA:   3'- -UGCGUA------------GC-GAGuUGUGCGC-GUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 99563 0.68 0.890112
Target:  5'- gUGUAUCuGCgauaaGAUACGCGCGCGUa- -3'
miRNA:   3'- uGCGUAG-CGag---UUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 98935 0.71 0.772012
Target:  5'- uGCGCGU-GCgCGACGCGCGCGUGUUc -3'
miRNA:   3'- -UGCGUAgCGaGUUGUGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 98401 0.67 0.937795
Target:  5'- -gGCcgCGCUgAACGCGCucacGCACGa-- -3'
miRNA:   3'- ugCGuaGCGAgUUGUGCG----CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 98320 0.68 0.903534
Target:  5'- uUGCAUcCGUUCAACGUGCaCAUGUUGg -3'
miRNA:   3'- uGCGUA-GCGAGUUGUGCGcGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 97881 0.66 0.951523
Target:  5'- cUGCG-CGC-C-GCACGgGCACGUUGc -3'
miRNA:   3'- uGCGUaGCGaGuUGUGCgCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 97715 0.67 0.931146
Target:  5'- uCGUAUUGCUUcgcgcuagaccgcgAGCGCGCGCGCu--- -3'
miRNA:   3'- uGCGUAGCGAG--------------UUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 97618 0.66 0.955607
Target:  5'- gACGCuUUGCaaAACACGUGCGCa--- -3'
miRNA:   3'- -UGCGuAGCGagUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 97378 0.66 0.942621
Target:  5'- cUGCca-GCUCAgguuuugcuGCGCGCGCaugGCGUUGa -3'
miRNA:   3'- uGCGuagCGAGU---------UGUGCGCG---UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 96841 0.67 0.909875
Target:  5'- cGCGCcUUGUUugaCGGCGCGCGCACa--- -3'
miRNA:   3'- -UGCGuAGCGA---GUUGUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 96443 0.76 0.4748
Target:  5'- -gGCGUCGCUC-GCGCGCGcCACGg-- -3'
miRNA:   3'- ugCGUAGCGAGuUGUGCGC-GUGCaac -5'
6804 3' -53.4 NC_001875.2 + 95178 0.68 0.903534
Target:  5'- cGCGCcccgaGCUCA--GCGCGCACGa-- -3'
miRNA:   3'- -UGCGuag--CGAGUugUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 94798 0.67 0.927387
Target:  5'- cCGCG-CGCgugCAGCGcCGUGCACGg-- -3'
miRNA:   3'- uGCGUaGCGa--GUUGU-GCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 94608 0.67 0.939756
Target:  5'- gGCGguUCGCUgagcugcagcggCGGCacaacgugauacauuACGCGCACGUUu -3'
miRNA:   3'- -UGCguAGCGA------------GUUG---------------UGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 94479 0.66 0.951523
Target:  5'- gGCGCGcgCGUUC-GCACgaGCGCGCGg-- -3'
miRNA:   3'- -UGCGUa-GCGAGuUGUG--CGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 93682 0.69 0.852436
Target:  5'- gGCGC-UCGCguu-CACGCGCAUGg-- -3'
miRNA:   3'- -UGCGuAGCGaguuGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 93630 0.67 0.927387
Target:  5'- aGCGCAUCGaggcCAACuuuacccacuACGaGCACGUUGa -3'
miRNA:   3'- -UGCGUAGCga--GUUG----------UGCgCGUGCAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.