miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 81342 0.71 0.742481
Target:  5'- cGCGCGgcgCGCUgGugcCGCGCGCACGc-- -3'
miRNA:   3'- -UGCGUa--GCGAgUu--GUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 130294 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 66046 0.72 0.701721
Target:  5'- cGCGCAggcaccgcgCGC-CGACGcCGCGCGCGUg- -3'
miRNA:   3'- -UGCGUa--------GCGaGUUGU-GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 77482 0.72 0.712029
Target:  5'- uGCGC-UCGCcCAACGCGCcggGCGCGUc- -3'
miRNA:   3'- -UGCGuAGCGaGUUGUGCG---CGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 74301 0.72 0.712029
Target:  5'- aGCGCAUCGCcuaCGGCGCGCaggcgccggacaGCACGg-- -3'
miRNA:   3'- -UGCGUAGCGa--GUUGUGCG------------CGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 4583 0.72 0.722265
Target:  5'- cCGCAU-GCcCGACAUGCGCACGa-- -3'
miRNA:   3'- uGCGUAgCGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 573 0.71 0.732419
Target:  5'- gUGCAagUCGUUCAACGCGuCGCACa--- -3'
miRNA:   3'- uGCGU--AGCGAGUUGUGC-GCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 51956 0.71 0.732419
Target:  5'- gGCGCGaCGUgCcGCACGCGCGCGcgUGg -3'
miRNA:   3'- -UGCGUaGCGaGuUGUGCGCGUGCa-AC- -5'
6804 3' -53.4 NC_001875.2 + 124919 0.71 0.732419
Target:  5'- cGCGCGguccaCGCccUCGGCcgaGCGCACGUUGg -3'
miRNA:   3'- -UGCGUa----GCG--AGUUGug-CGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 130228 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130162 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 130036 0.72 0.701721
Target:  5'- gACGCAcCGCUaaaaaUAGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGA-----GUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 30440 0.76 0.504304
Target:  5'- -aGCGUccaaCGCgCAGCugGCGCGCGUUGc -3'
miRNA:   3'- ugCGUA----GCGaGUUGugCGCGUGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 47906 0.75 0.524406
Target:  5'- cGCGCGguggUGCUgccgCAGCACGCGUACGUg- -3'
miRNA:   3'- -UGCGUa---GCGA----GUUGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 42221 0.75 0.543781
Target:  5'- cACGCGUggUGCUUGucaauguGCACGCGCACGUUu -3'
miRNA:   3'- -UGCGUA--GCGAGU-------UGUGCGCGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 30979 0.75 0.555104
Target:  5'- uGCGCcucgCGCUCAaaaagcaagauuACGCGCGCGCGg-- -3'
miRNA:   3'- -UGCGua--GCGAGU------------UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 111320 0.74 0.607295
Target:  5'- cACGCGUCGCUguuuUGCGCGCACGc-- -3'
miRNA:   3'- -UGCGUAGCGAguu-GUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 130462 0.73 0.649442
Target:  5'- gACGCAcCGCU-AGCACGCGC-CGUUc -3'
miRNA:   3'- -UGCGUaGCGAgUUGUGCGCGuGCAAc -5'
6804 3' -53.4 NC_001875.2 + 19006 0.73 0.670462
Target:  5'- cGCGCAggccgcaacgCGCUUuGCACGUGCGCGg-- -3'
miRNA:   3'- -UGCGUa---------GCGAGuUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 32889 0.73 0.670462
Target:  5'- aGCGCugcaaacgGCUgAACACGCGCGCGUc- -3'
miRNA:   3'- -UGCGuag-----CGAgUUGUGCGCGUGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.