miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 42052 0.7 0.82724
Target:  5'- cGCGCugCGUUCGcGCACGUGCACGa-- -3'
miRNA:   3'- -UGCGuaGCGAGU-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 82720 0.7 0.830702
Target:  5'- cGCGCAggggcacggggcagCGCUU--UACGCGCACGUa- -3'
miRNA:   3'- -UGCGUa-------------GCGAGuuGUGCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 113858 0.69 0.835838
Target:  5'- cCGCA-CGUUgAACGCGgGCACGUc- -3'
miRNA:   3'- uGCGUaGCGAgUUGUGCgCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 40850 0.69 0.835838
Target:  5'- gGCGC-UCGC-CAAgACGCGCACc--- -3'
miRNA:   3'- -UGCGuAGCGaGUUgUGCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 23803 0.69 0.844239
Target:  5'- gACGUGUCGCUCcGCggcgucggGCGCGC-CGUg- -3'
miRNA:   3'- -UGCGUAGCGAGuUG--------UGCGCGuGCAac -5'
6804 3' -53.4 NC_001875.2 + 37043 0.69 0.852436
Target:  5'- gUGCAcggCGCgu-GCACGCGCGCGg-- -3'
miRNA:   3'- uGCGUa--GCGaguUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 91192 0.69 0.852436
Target:  5'- cGCGCAacaGC-CGGCGCGUGCGCGc-- -3'
miRNA:   3'- -UGCGUag-CGaGUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 107835 0.7 0.809488
Target:  5'- cGCGCccggugCGCcuugCGACGCGCGCGaGUUGg -3'
miRNA:   3'- -UGCGua----GCGa---GUUGUGCGCGUgCAAC- -5'
6804 3' -53.4 NC_001875.2 + 92507 0.7 0.800352
Target:  5'- gGCGCAaaacgggCGCUCGuGCGCGCccgGCGCGUUu -3'
miRNA:   3'- -UGCGUa------GCGAGU-UGUGCG---CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 57326 0.7 0.800352
Target:  5'- gACGCAauugUUGCggCAGCGCuGCGCGCGgcGa -3'
miRNA:   3'- -UGCGU----AGCGa-GUUGUG-CGCGUGCaaC- -5'
6804 3' -53.4 NC_001875.2 + 8830 0.71 0.772012
Target:  5'- gGCGCGcccaacaccaacUCaUUCAGCugGCGCACGUg- -3'
miRNA:   3'- -UGCGU------------AGcGAGUUGugCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 52525 0.71 0.772012
Target:  5'- aGCGCcgCGCUCAucgaaaGCACGCGC-Ca--- -3'
miRNA:   3'- -UGCGuaGCGAGU------UGUGCGCGuGcaac -5'
6804 3' -53.4 NC_001875.2 + 66923 0.71 0.772012
Target:  5'- gGCGCAcaaugucgucgUCGCUCuGCGCGCGCuuGa-- -3'
miRNA:   3'- -UGCGU-----------AGCGAGuUGUGCGCGugCaac -5'
6804 3' -53.4 NC_001875.2 + 26671 0.7 0.781604
Target:  5'- gAUGCAcaugaugacuUCGCcCAACACGCGCcgcGCGUUc -3'
miRNA:   3'- -UGCGU----------AGCGaGUUGUGCGCG---UGCAAc -5'
6804 3' -53.4 NC_001875.2 + 11169 0.7 0.781604
Target:  5'- cGCGCG-CGCaUCGACAaguUGCGCGcCGUUGu -3'
miRNA:   3'- -UGCGUaGCG-AGUUGU---GCGCGU-GCAAC- -5'
6804 3' -53.4 NC_001875.2 + 38274 0.7 0.791054
Target:  5'- aGCGCcUCGC--AGCGCGCGUACGa-- -3'
miRNA:   3'- -UGCGuAGCGagUUGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 48518 0.7 0.791054
Target:  5'- gGCGCGcCGCcCGGCGCGCGCcccGCGg-- -3'
miRNA:   3'- -UGCGUaGCGaGUUGUGCGCG---UGCaac -5'
6804 3' -53.4 NC_001875.2 + 47665 0.7 0.800352
Target:  5'- aACGCAcggaCGCggccgCGGCGCGCcGCGCGUUu -3'
miRNA:   3'- -UGCGUa---GCGa----GUUGUGCG-CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 42724 0.7 0.800352
Target:  5'- gGCGCAcccggucgUCGCgcgCGGCgACGCGCAUGgUGa -3'
miRNA:   3'- -UGCGU--------AGCGa--GUUG-UGCGCGUGCaAC- -5'
6804 3' -53.4 NC_001875.2 + 93682 0.69 0.852436
Target:  5'- gGCGC-UCGCguu-CACGCGCAUGg-- -3'
miRNA:   3'- -UGCGuAGCGaguuGUGCGCGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.